PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003206G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 348aa    MW: 37545.4 Da    PI: 5.7711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003206G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12170217355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+L+
  PH01003206G0160 170 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLE 217
                      67999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.809167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17170236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-17171228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-13172221No hitNo description
SMARTSM003533.0E-14173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVDQAAAAA LMQQQQYAAG  60
EHRPRKAAKV NNTSWDSCIT EQGSPADSSS PTILSFGGHA DAAAVFAKAQ APTAPYYGAS  120
AAAPVKPKKE VDAAVPFPQA RPVKRSYDAM VAAAEPAKAP AASRPASQNQ DHILAERKRR  180
EKLSQRFIAL SKIVPGLKKM DKASVLGDAI KYVKQLEDQV KGLEEEARRR PVEAAVLFKK  240
SQLSADDDDG SSCDENFEGG EGGLPEIEAR VSERTVLVKI HCENRKGALI TALSEVESIG  300
LTIMNTNVLP FTTSSLDITI MAMAGEDFSL SVKDIVKKLN QAFKSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13171226863Transcription factor MYC2
5gnj_B1e-13171226863Transcription factor MYC2
5gnj_E1e-13171226863Transcription factor MYC2
5gnj_F1e-13171226863Transcription factor MYC2
5gnj_G1e-13171226863Transcription factor MYC2
5gnj_I1e-13171226863Transcription factor MYC2
5gnj_M1e-13171226863Transcription factor MYC2
5gnj_N1e-13171226863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180ERKRRE
2176181RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003206G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205390.0AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661241.10.0transcription factor bHLH18
TrEMBLA0A0E0KIG40.0A0A0E0KIG4_ORYPU; Uncharacterized protein
STRINGOPUNC03G29750.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-49bHLH family protein