PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

SBP

Protein Properties

Length: 385aa MW: 41252.4 Da PI: 9.7268

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003178G0220	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	46.7	8.4e-15	126	157	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l efDe krsCr+rL++hn+rrrk+q+ PH01003178G0220 126 CRFHLLGEFDEVKRSCRKRLDGHNRRRRKPQP 157 59***************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-4	78	142	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	11.426	79	155	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.51E-12	126	160	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.1E-7	127	154	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MPSWDLGTVV GPSGVGALDL KLGAPTSWKA AAAPVPPPSA LAKRPRAGAV LGGGVHGRPV 60 QVPRVPPPAQ GLRGALQDAR RHRRRPAAAL LSTVQQLSRS GEFRFRPCIH GDLSWEILMI 120 GGIVLCRFHL LGEFDEVKRS CRKRLDGHNR RRRKPQPDPL NPGGLFANHH GATRFASYPQ 180 IFSTTSMAEH KWPASAVKTE TDAFQEQYYP ALHLNGAASL FHVKERKHFP FLTDHSDTAA 240 TAFSCQPFTI TPSSESSSNS SRHSNGKMFA QDGGLDNCAL SLLSDNPTPA QIMVPVAQSL 300 GGAGIQYGSV ARLPNDNDVS LTGLSYVRVE DKNTPILDTS TSHTATATTS SAAATQLQYH 360 GYYHVNADQG NSDGAIQALP FSSW*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MPSWDLGTVV GPSGVGALDL KLGAPTSWKA AAAPVPPPSA LAKRPRAGAV LGGGVHGRPV  60
QVPRVPPPAQ GLRGALQDAR RHRRRPAAAL LSTVQQLSRS GEFRFRPCIH GDLSWEILMI  120
GGIVLCRFHL LGEFDEVKRS CRKRLDGHNR RRRKPQPDPL NPGGLFANHH GATRFASYPQ  180
IFSTTSMAEH KWPASAVKTE TDAFQEQYYP ALHLNGAASL FHVKERKHFP FLTDHSDTAA  240
TAFSCQPFTI TPSSESSSNS SRHSNGKMFA QDGGLDNCAL SLLSDNPTPA QIMVPVAQSL  300
GGAGIQYGSV ARLPNDNDVS LTGLSYVRVE DKNTPILDTS TSHTATATTS SAAATQLQYH  360
GYYHVNADQG NSDGAIQALP FSSW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	154	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003178G0220

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF447884	2e-57	KF447884.1 Triticum aestivum squamosa promoter-binding-like protein 23 (SPL23) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178580.1	1e-109	squamosa promoter-binding-like protein 2
Swissprot	Q0JGI1	1e-102	SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBL	A0A3Q8AL04	1e-162	A0A3Q8AL04_9POAL; Squamosa-promoter binding protein-like protein
STRING	Pavir.J02262.1.p	1e-110	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10456	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	9e-17	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]