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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003147G0100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Dof | ||||||||
Protein Properties | Length: 294aa MW: 30822.3 Da PI: 8.361 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.7 | 7.1e-40 | 55 | 115 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++s PH01003147G0100 55 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAS 115 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-31 | 53 | 113 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-33 | 56 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.227 | 59 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 61 | 97 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMAGAPPMHI CMDSDWLKGI VPEEPGMGSS SPSAELIMCP RPMQAAADRR LRPQHDQPLK 60 CPRCESTHTK FCYYNNYSLS QPRYFCKTCR RYWTKGGSLR NVPVGGGCRK NKRASASKKA 120 VAAAVSPAPL HGRHMETGLH LSFSGMQLPP PAASADPLCS LGLLDWKYDP ILAGSGGAAA 180 AAAALERANS EAYFAGAGMM GIAAAGGGAD CHALSALRYA AGLGEHLALP FGATRAEHDA 240 VEMKPAAERL LSLEWCGEAS RVAPESSISS LSGLGLWSGM IGGAHHHHGS SAAI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003147G0100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100350 | 0.0 | FP100350.1 Phyllostachys edulis cDNA clone: bphylf036a01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953626.1 | 1e-156 | dof zinc finger protein 1 | ||||
TrEMBL | A0A0A9D8K8 | 1e-156 | A0A0A9D8K8_ARUDO; Uncharacterized protein | ||||
STRING | Si017962m | 1e-155 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 6e-39 | Dof family protein |