PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003058G0110

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

BES1

Protein Properties

Length: 354aa MW: 37327.1 Da PI: 8.2816

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003058G0110	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	204	4.4e-63	13	161	2	148
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspess 93 g++r ptw+ErEnn+ RERrRRaiaak+yaGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+ e+ + +g+sas sp+ss PH01003058G0110 13 GGTRVPTWRERENNRWRERRRRAIAAKVYAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPpqERRDPIGRSASPSPCSS 106 789*********************************************************************999999********** PP DUF822 94 lqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148 +q +sp++sy++sp+sssfps+ s+++i+l + +sl+p+l++ls++ss PH01003058G0110 107 YQ--------PSPRASYNPSPASSSFPSSGSSSQITLGGNnfiggvdgSSLIPWLKNLSSSSS 161 ........9**********************9998899*9*******987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.0E-69	13	157	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MTNGAGGGGG GLGGTRVPTW RERENNRWRE RRRRAIAAKV YAGLRAYGNY NLPKHCDNNE 60 VLKALCNEAG WTVEPDGTTY RKGCKPPPQE RRDPIGRSAS PSPCSSYQPS PRASYNPSPA 120 SSSFPSSGSS SQITLGGNNF IGGVDGSSLI PWLKNLSSSS SFASTSKFPQ LHHLYFNGGS 180 ISAPVTPPSS SPTRTPRIKT DWENPSVQPP WAGANYTSLP NSTPPSPGHQ IAPDPAWLAG 240 FQISSAGPSS PTYNLVSHNP FGIFKEIVAG SSRVCTPGQS GTCSPVMGGM PAHHDVQMVD 300 GAPDDFAFGS SSNGNNESPG LVKAWEGERI HEECASDELE LTLGSSKTRA DPS*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MTNGAGGGGG GLGGTRVPTW RERENNRWRE RRRRAIAAKV YAGLRAYGNY NLPKHCDNNE  60
VLKALCNEAG WTVEPDGTTY RKGCKPPPQE RRDPIGRSAS PSPCSSYQPS PRASYNPSPA  120
SSSFPSSGSS SQITLGGNNF IGGVDGSSLI PWLKNLSSSS SFASTSKFPQ LHHLYFNGGS  180
ISAPVTPPSS SPTRTPRIKT DWENPSVQPP WAGANYTSLP NSTPPSPGHQ IAPDPAWLAG  240
FQISSAGPSS PTYNLVSHNP FGIFKEIVAG SSRVCTPGQS GTCSPVMGGM PAHHDVQMVD  300
GAPDDFAFGS SSNGNNESPG LVKAWEGERI HEECASDELE LTLGSSKTRA DPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	7e-25	16	90	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	7e-25	16	90	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	7e-25	16	90	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	7e-25	16	90	372	446	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003058G0110

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101229	0.0	AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003563774.1	0.0	protein BZR1 homolog 3
Refseq	XP_015641160.1	0.0	protein BZR1 homolog 3
Swissprot	Q5Z9E5	0.0	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A0D9WR43	0.0	A0A0D9WR43_9ORYZ; Uncharacterized protein
STRING	LPERR06G14930.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1366	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	3e-64	BES1/BZR1 homolog 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]