PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01003044G0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | SBP | ||||||||
Protein Properties | Length: 195aa MW: 20421.8 Da PI: 10.0894 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.3 | 1.9e-42 | 90 | 166 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adlseak+yhrrhkvCe+hska+vvlv+gl+qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk++a PH01003044G0090 90 CQAERCGADLSEAKRYHRRHKVCETHSKAAVVLVAGLRQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSA 166 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-35 | 84 | 151 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.291 | 87 | 164 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.85E-39 | 88 | 168 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.7E-32 | 90 | 163 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDRKDKPRES SSAASMAALA AAAAAGDGAD VARADGMLPP SGEEDKKPKL VTVPMASVGA 60 SSSSAAAMAV RRGGAAGGAV AAGGGGGPSC QAERCGADLS EAKRYHRRHK VCETHSKAAV 120 VLVAGLRQRF CQQCSRFHEL SEFDDTKRSC RRRLAGHNER RRKSSAEAHG DGCRHADPDG 180 RSHPGNPPLN HFQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-38 | 81 | 163 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01003044G0090 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091672 | 0.0 | FP091672.1 Phyllostachys edulis cDNA clone: bphylf033o15, full insert sequence. | |||
GenBank | FP094478 | 0.0 | FP094478.1 Phyllostachys edulis cDNA clone: bphyst005i03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560169.3 | 3e-69 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q6Z461 | 4e-55 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A3S6H725 | 1e-135 | A0A3S6H725_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | MLOC_13032.1 | 6e-74 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 5e-40 | squamosa promoter binding protein-like 4 |