PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002972G0240
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 175aa    MW: 18772.6 Da    PI: 4.3596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002972G0240genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.7e-052183955
                     TCHHHHHHHHHHHHHHH CS
              HLH 39 sKaeiLekAveYIksLq 55
                     +Ka+i + A+eYI++Lq
  PH01002972G0240  2 DKASIIKDAIEYIQQLQ 18
                     8***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-5133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.91E-4122No hitNo description
PROSITE profilePS508888.505117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-7132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDKASIIKDA IEYIQQLQAQ ERQMLAELSA LEFAAAAGEE NDDGVLSSPA SAQRKKVKRP  60
LSVSSINDAL LAATSPPVEI LELRVSEVGD KVLVVSVSCS KGRDAMAKVC RALEELRLKV  120
ITANITSVCG CLMHTLFVEE DHMDQMQIKE MIAAALSQVD ATGSPPEFDE LLGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002972G0240
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852546e-43BT085254.1 Zea mays full-length cDNA clone ZM_BFb0344G23 mRNA, complete cds.
GenBankEU9697846e-43EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
GenBankKJ7279676e-43KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160196.14e-76transcription factor bHLH35-like
TrEMBLA0A446MAL32e-75A0A446MAL3_TRITD; Uncharacterized protein
TrEMBLA0A453BRN99e-76A0A453BRN9_AEGTS; Uncharacterized protein
STRINGTraes_2DL_DE3909A32.11e-75(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-27bHLH family protein