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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002927G0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C3H | ||||||||
Protein Properties | Length: 191aa MW: 19767.4 Da PI: 6.3546 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.9 | 4.2e-09 | 89 | 112 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C ++ ++G C++G +CkF+H+ PH01002927G0060 89 EPDCTYYVKFGSCRFGMKCKFNHP 112 789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.906 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 89 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-5 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MADADAKPPP KSDPYASPIA SISPSSPSSG GGDAADAAAI ENQLADELPN PSGWEDGPIP 60 SGGDEVSGEK LPASAAADSR PRFPRRHGEP DCTYYVKFGS CRFGMKCKFN HPARKKKNRV 120 KGSGSGGSGS NSSSNKASSP DDEQESRQSG FATENLEANH EALHGPTAEA FDQPKIANKT 180 NLHKSGLSTN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002927G0060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370517 | 3e-48 | AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620300.1 | 2e-43 | zinc finger CCCH domain-containing protein 65 isoform X1 | ||||
Refseq | XP_015620302.1 | 3e-43 | zinc finger CCCH domain-containing protein 65 isoform X3 | ||||
Refseq | XP_015620304.1 | 2e-43 | zinc finger CCCH domain-containing protein 65 isoform X5 | ||||
Refseq | XP_015620306.1 | 2e-43 | zinc finger CCCH domain-containing protein 65 isoform X7 | ||||
Swissprot | Q2QTY2 | 3e-44 | C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | A0A446U0P7 | 1e-47 | A0A446U0P7_TRITD; Uncharacterized protein | ||||
TrEMBL | M7ZGS8 | 1e-48 | M7ZGS8_TRIUA; Zinc finger CCCH domain-containing protein 65 | ||||
STRING | OPUNC12G07750.1 | 2e-46 | (Oryza punctata) | ||||
STRING | Traes_5BS_735791EC5.2 | 2e-48 | (Triticum aestivum) | ||||
STRING | TRIUR3_24689-P1 | 2e-49 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7928 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.1 | 1e-10 | zinc finger nuclease 3 |
Publications ? help Back to Top | |||
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