PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002919G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 391aa    MW: 43093.6 Da    PI: 6.6744
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002919G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10221269355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PH01002919G0020 221 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 269
                      58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.45E-11216273No hitNo description
SuperFamilySSF474592.09E-16216285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.351218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-16220285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-8221269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MAVGESVASR RAHVISRSVI QIGLSLNAGM IRCSFELLGG SYLATSKRSP TAWEVRKIGV  60
SRQLEMYSGQ QSDQDPAANS SKELLEVNWN SVTMHQKMGY NSGPYGFHAY GVELEERPGM  120
YTCSTGTFCQ NTQMSDEHSG GVKKRQGIDD CIALLNPSAS SRMQNVGDQQ TEVSSQPERN  180
SVEEGNKKIS PKIQSKQDSS DDDGTKEDFV HVRAKRGQAS NSHSLAERLR RKKISERMKL  240
LQDLVPGCSK ITGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPELGFDI EQILSKQMML  300
SQDRHLAFYG ADPASSTLVA HFNQGIMQPD MMCNVSNPVD VFQGTFHDVS TMNQIPEMWV  360
GLQNIPHMNF NPGVAADSST NNAGSMKIEQ *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002919G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609590.0AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981901.10.0transcription factor bHLH49
RefseqXP_004981902.10.0transcription factor bHLH49
RefseqXP_022678584.10.0transcription factor bHLH49
TrEMBLA0A3L6S4S40.0A0A3L6S4S4_PANMI; Transcription factor bHLH49-like
STRINGTraes_4AL_0BB0A30D1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.16e-51bHLH family protein