PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002779G0140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 26191.8 Da PI: 8.5419 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.4 | 1.3e-08 | 169 | 213 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L PH01002779G0140 169 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 213 99***********************7.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.84E-15 | 162 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-10 | 162 | 218 | No hit | No description |
PROSITE profile | PS50888 | 15.77 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-14 | 166 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-6 | 169 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAGQQQPPGA EDDFLEHFFG IPSSFPSAGA AGAGGSHGAR ADHTFPLALS LDAAAEASGS 60 AKRLHDDPDG GKPVSSLPIF FVRAGRGCEL VGENWGLRPT EDRDPVQLAG LFAPVFASTG 120 GVQPPHFRPA PPPQVFHAQP KPGEGAMALQ PPAPRPKVRA RRGQATDPHS IAERLRRERI 180 AERMRALQEL VPNTNKTDRA AMLDEILDYV KFLRLQVKVL SMSRLGGADA VAQLVADVPL 240 SVKVTL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 178 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002779G0140 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096075 | 0.0 | FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804227.1 | 5e-96 | transcription factor UNE12 | ||||
TrEMBL | A0A2S3GW17 | 1e-94 | A0A2S3GW17_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03221.1.p | 1e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 3e-28 | bHLH family protein |