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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002726G0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | CAMTA | ||||||||
Protein Properties | Length: 951aa MW: 105893 Da PI: 5.7002 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 181.5 | 9.4e-57 | 21 | 137 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+v+vl+cyYah+een++fq PH01002726G0060 21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPSSGSLFLFDRKILRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114 5679****************************************************************************************** PP CG-1 96 rrcywlLeeelekivlvhylevk 118 rr+ywlLee + +ivlvhylevk PH01002726G0060 115 RRTYWLLEEGFMNIVLVHYLEVK 137 ********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.9 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.3E-77 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.8E-50 | 22 | 136 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.5E-7 | 470 | 559 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 1.6E-7 | 471 | 544 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 4.98E-17 | 471 | 557 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 4.93E-11 | 578 | 658 | No hit | No description |
SuperFamily | SSF48403 | 7.17E-12 | 583 | 660 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 13.257 | 583 | 660 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 9.7E-12 | 584 | 661 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.0E-6 | 585 | 661 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.19 | 599 | 631 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.14 | 599 | 631 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 290 | 638 | 667 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 8.5E-8 | 772 | 824 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.094 | 773 | 795 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.828 | 774 | 803 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0051 | 775 | 794 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0069 | 796 | 818 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.395 | 797 | 821 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.1E-4 | 799 | 818 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 951 aa Download sequence Send to blast |
MAEIHKYGLS NQPPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPSSGSLFL 60 FDRKILRYFR KDGHNWRKKK DGKTIKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL 120 LEEGFMNIVL VHYLEVKGGK QSFSCAKEAE EIERLSNADS PACSNSFASQ SQVASQTMDA 180 ESPISGQISE YEDAETDNCR ASSRYHPFVE MQQPVDGVMM DNLLGASAPN TSVNNLGKIS 240 ILHSEVLCKC WLLAHISFTT VAGYHGEMQP TTANLHNHFV THHDIASVFN EAGAGLRGGS 300 KSRLDSVQFG EPFPEYPIGF MEPTLYSSVA TMESNNLDDS SRLETFMSEA LYTNNLTQKE 360 ADALSAAGMT PSQVQNDSYT EGSIRYPLLK QSSLDLFKIE PDGLKKFDSF SRWMSSELPE 420 VVDLDIKSSS DAFWSSTETV NVADGSSMPI NEQLDAYVVS PSLSQDQLFS IIDVSPSWAT 480 GSKKTKVLIM GTFLANKEDV ENCKWSCMFG DVEVPTEVLA DGSLRCYTPV HQSGRVPFYV 540 TCSNRVACSE VREFEFRDPE SQYMETLDPH STGINEMHLH IRLEKLLSLG PDDYERDARG 600 WTALHWAASC GRERTVGALI ANGAASGALT DPTPQFPSGR TPADLASENG HKGIAGFLAE 660 SALTSHLSAL TLKESKGGNV EEICGLAAAE DFTESSSAQL ACQDSQAESL KDSLSAVRKS 720 TQAAARIFQA FRVESFHRKK VVEYGDDDCG LSDEHTLSLV SLRNAKPGQN DVPLHSAAVR 780 IQNKFRGWKG RKEFMIIRQK IVKLQAHVRG HQVRKNYRKI VWSVGIVEKV ILRWRRKGRG 840 LRGFQPEKQL EGPSQIQPAK DEDEYDFLKD GRKQAEGRLE RALARVKSMT QYPEAREQYH 900 RLQTCVTELQ ESKAIQDRQL SDAAGADGGD FMAELEDLCG NEDTPMSTIL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002726G0060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004341 | 0.0 | AP004341.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524E08. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647012.1 | 0.0 | calmodulin-binding transcription activator 1 isoform X1 | ||||
TrEMBL | K3ZQB7 | 0.0 | K3ZQB7_SETIT; Uncharacterized protein | ||||
STRING | OMERI07G19500.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-123 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |