 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PH01002691G0230 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 289aa MW: 31676.8 Da PI: 4.8856 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01002691G0230 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.2 | 6.9e-19 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ +eq+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k
PH01002691G0230 71 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 124
4557899**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.4 | 5.1e-40 | 70 | 162 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl++eqv++LE+sFe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL +++dal++e ++L++++++L++e++e
PH01002691G0230 70 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALCARHDALRHECDALRHDKDALAAEIME 162
69**************************************************************************************99976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 289 aa
Download sequence Send
to blast |
MKRPTCRGLS MASQKTTDQQ EDSRYMERQE VDGHGAAERD DVIVRAYDDE EEDEELAGGA 60
GGPGACGLGE KKRRLAAEQV RALERSFEAD NKLDPERKAR IARDLRLHPR QVAVWFQNRR 120
ARWKTKQIER DFAALCARHD ALRHECDALR HDKDALAAEI MELKGKVETQ MAVKLEATEE 180
RPSATAAAAG AAAVCKDWST DSDSSAVFNE EPSPYSGVAF DHHQPGFTGF TSFLASSSAL 240
SSSFPSLYHG SHLDQDDGLL GGASDELGGA GFFAEEHAAS LSWYGSEGW
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 118 | 126 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP099753 | 0.0 | FP099753.1 Phyllostachys edulis cDNA clone: bphyem212a11, full insert sequence. |
