 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PH01002681G0110 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
GATA |
| Protein Properties |
Length: 229aa MW: 24040.8 Da PI: 8.2055 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01002681G0110 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 65.8 | 4.7e-21 | 124 | 158 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+nCgtt+TplWR+gp+g+k+LCnaCG++++k+++
PH01002681G0110 124 CANCGTTSTPLWRNGPRGPKSLCNACGIRFKKEER 158
********************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MLHHYSGNDA CPAMASTFSL FFPQVEEACD DCNTITTSPS SRSPSSSSTG SVDCTLSLGT 60
PSSRRAAPEP KRRTPASYPS LSATVSWDPA AESYYCQQGK PTTAGASKGA VGSVGHYPLL 120
DRRCANCGTT STPLWRNGPR GPKSLCNACG IRFKKEERRA AAAAESGGAW CGYSAQHAHG 180
SAPKAPRAVS YAEEALPCGD VDAEAPFLAW RLNVVPPAPA RPTAFSVWP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000250|UniProtKB:Q6L5E5}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP095696 | 0.0 | FP095696.1 Phyllostachys edulis cDNA clone: bphyst013i06, full insert sequence. |
