PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002677G0180

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 394aa MW: 41824.6 Da PI: 6.7789

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002677G0180	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.6e-09	212	259	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka +L + ++Y++sLq PH01002677G0180 212 SHSLAERVRRERISQRMKVLQGLVPGC----NKEIGKALMLDEIINYVQSLQ 259 8************************....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-16	206	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-9	206	263	No hit	No description
PROSITE profile	PS50888	15.053	208	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-15	208	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-6	212	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	214	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MESRGGAGGG CGDYIASLLN SSPRLDFGVL GGMPVLDGVV AAAAGGGGDC LEKFCGDPGF 60 AERAARLSSF NGQRFAGLFG MPPPAPAASN GEFGGGGGGS REASSVSDPA SAMKDANAKK 120 RKAPAAKGKG KEPSLSTSCQ VGEQKESDAK RCKTEEGEKK ESPVKPKAEQ AGSDSSVEDG 180 GQKQGKGKNV KPVEPPKDYV HVRARRGQAT DSHSLAERVR RERISQRMKV LQGLVPGCNK 240 EIGKALMLDE IINYVQSLQR QVEFLSMKLA TVNPLDFSNL PTLLHKEFSD QADVFQSFVP 300 NSMESQCTLN QLDLALSQAA NAQYVFQDGT ASTNLQQSLY TSQQRNFWED DLQSVFHIDN 360 GQSQENGVSA QSFHGRSVAS RPLENGILIN VDH*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MESRGGAGGG CGDYIASLLN SSPRLDFGVL GGMPVLDGVV AAAAGGGGDC LEKFCGDPGF  60
AERAARLSSF NGQRFAGLFG MPPPAPAASN GEFGGGGGGS REASSVSDPA SAMKDANAKK  120
RKAPAAKGKG KEPSLSTSCQ VGEQKESDAK RCKTEEGEKK ESPVKPKAEQ AGSDSSVEDG  180
GQKQGKGKNV KPVEPPKDYV HVRARRGQAT DSHSLAERVR RERISQRMKV LQGLVPGCNK  240
EIGKALMLDE IINYVQSLQR QVEFLSMKLA TVNPLDFSNL PTLLHKEFSD QADVFQSFVP  300
NSMESQCTLN QLDLALSQAA NAQYVFQDGT ASTNLQQSLY TSQQRNFWED DLQSVFHIDN  360
GQSQENGVSA QSFHGRSVAS RPLENGILIN VDH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002677G0180

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146737.1	0.0	transcription factor bHLH78-like isoform X1
TrEMBL	A0A3B6TQ85	0.0	A0A3B6TQ85_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6TQT7	0.0	A0A3B6TQT7_WHEAT; Uncharacterized protein
STRING	BRADI3G40860.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-56	bHLH family protein