PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01002673G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | SBP | ||||||||
Protein Properties | Length: 401aa MW: 42693.7 Da PI: 7.6747 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.8 | 2.3e-41 | 97 | 173 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+ PH01002673G0070 97 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.3E-36 | 89 | 158 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.342 | 94 | 171 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.32E-39 | 95 | 176 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.1E-31 | 97 | 170 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MDWDLKMPPA WDLAELEHDA AAASSGITAA GRPECSVDLK LGGLGEFGAP AAAADSRKEP 60 APAKVPAAAS PSPAKRPRPS GGGGGSGSGG AGQCPSCAVD GCKADLSKCR DYHRRHKVCE 120 AHSKTPVVVV AGREMRFCQQ CSRFHLLAEF DEAKRSCRKR LDGHNRRRRK PQPDTMNSAS 180 FITSQQGTRF SSFPTPRPEP NWPGIIKTES PYYTHQIPLG ISNRHHFVGS TSTYTKEDRR 240 FPFLQEGEIN FATGVALEAS VCQPLLKTVA LPESSSSSSK MFSDGLTPVL DSDCALSLLS 300 ARANSSGVDV SRMVQPTEHI PMAQPLVSSL QFSSSSWFAR SQASTGAVST AGFSCPVVES 360 DQLNTVISSN DNEMNYNGIF HVGGEGSSDG TSPSLPFSWQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 84 | 170 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 78 | KRPRP |
2 | 153 | 170 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01002673G0070 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094913 | 0.0 | FP094913.1 Phyllostachys edulis cDNA clone: bphyem212i14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194874.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 1e-160 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A3Q8AHR9 | 0.0 | A0A3Q8AHR9_9POAL; Squamosa-promoter binding protein-like protein | ||||
STRING | BRADI3G41250.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-43 | SBP family protein |