PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002654G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 409aa    MW: 44979.6 Da    PI: 7.5926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002654G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023130152323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+   Cgk+F +   L++H  +H
  PH01002654G0080 130 CSydGCGKTFVDAGALRKHAHVH 152
                      78889**************9887 PP
2zf-C2H214.97.9e-05157181123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y C+  +Cgk F ++s LkrH   H
  PH01002654G0080 157 YICHyeNCGKKFLDSSKLKRHFLIH 181
                      89*******************8877 PP
3zf-C2H221.65.9e-07187211123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++Cp   Cgk Fs   nLk H++tH
  PH01002654G0080 187 FVCPheGCGKAFSLDFNLKAHMKTH 211
                      89**********************9 PP
4zf-C2H216.62.3e-05219242323
                      ET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                      C+   Cg++F++ s L+ H++  H
  PH01002654G0080 219 CKypECGRRFTQESKLRAHMKAqH 242
                      77779***************9888 PP
5zf-C2H211.80.00076283308123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   C k + + + L+ H+++ H
  PH01002654G0080 283 YVCPydGCAKAYIHEYKLNLHLKKeH 308
                      99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-13123154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.928128157IPR007087Zinc finger, C2H2
SMARTSM003550.0018128152IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.8E-6129153No hitNo description
PROSITE patternPS000280130152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-14155177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.066157186IPR007087Zinc finger, C2H2
SMARTSM003550.013157181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159181IPR007087Zinc finger, C2H2
SuperFamilySSF576678.68E-14168220No hitNo description
Gene3DG3DSA:3.30.160.603.8E-20178214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.113187216IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4187211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280189211IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.053217242IPR007087Zinc finger, C2H2
SMARTSM003550.011217242IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-7218242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280219242IPR007087Zinc finger, C2H2
SuperFamilySSF576673.09E-6219242No hitNo description
Gene3DG3DSA:3.30.160.601.2E-8275305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.09E-6278305No hitNo description
SMARTSM003550.012283308IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974283313IPR007087Zinc finger, C2H2
PROSITE patternPS000280285308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGASFCLAPL QPGAAAPPPA SGTPALASPA PWCLEPVPEP GLWLLPRFSA RLAAWPRLQG  60
GTSPSTPARR LGRPWGLDHW SSGPVEPAAL IVFLPYSCTE DRLSALKAKD KEQGAEAAKA  120
EPTTEVLFLC SYDGCGKTFV DAGALRKHAH VHGERQYICH YENCGKKFLD SSKLKRHFLI  180
HTGEKNFVCP HEGCGKAFSL DFNLKAHMKT HSTDNYHLCK YPECGRRFTQ ESKLRAHMKA  240
QHEKVVLQNP GGPAMNRNAP GDHPPNTAKS SATPPAPSAE RPYVCPYDGC AKAYIHEYKL  300
NLHLKKEHPN HYEDAGAQAA SSKGTMPKNS HRSKPTLTAK MPLPKIPKRR GYTAPSPSVH  360
IPEEHQWPRK ALYEDDSEET EEEGDNAEEG AWRYRAASSD DEETEDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-321302388114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343349PKIPKRR
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002654G0080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149431.11e-176uncharacterized zinc finger protein At4g06634 isoform X1
SwissprotQ2V3L39e-89YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A453NWS41e-175A0A453NWS4_AEGTS; Uncharacterized protein
TrEMBLA0A453NX351e-175A0A453NX35_AEGTS; Uncharacterized protein
STRINGTraes_6DL_F47CFC6D9.11e-176(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.24e-85C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]