PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002648G0060

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 399aa MW: 46124.3 Da PI: 6.5884

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002648G0060	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.1	2e-22	86	183	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt ++v++L+ a+++++e+++ + ++k++W+ vs +m +rgf +sp+qC++k+++lnkryk+++e+ +++ +++++++ p+ PH01002648G0060 86 KWTSDMVKLLVSAVSYIDEDVEMDYgtsngrrkhamlKRKGKWKLVSTAMTDRGFAVSPQQCEDKFNDLNKRYKRLTEILGRGtSCQVVEHPPL 179 7************888888854233446677888899******************************************66999999999 PP trihelix 82 fdql 85 ++ + PH01002648G0060 180 LEGM 183 8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-20	84	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MEGNLPPRTL IPGAPFDLEA SMHSQQQPFH FAQPQLHQGM FPVPATIPMQ DLGNVVKTSL 60 SDDEDADDGH HHDRGGKVAS QWHRVKWTSD MVKLLVSAVS YIDEDVEMDY GTSNGRRKHA 120 MLKRKGKWKL VSTAMTDRGF AVSPQQCEDK FNDLNKRYKR LTEILGRGTS CQVVEHPPLL 180 EGMSLSGKLK EEARKLLSSK HLHYEEMCSY HNRNRLCLLD DPVLQKSLRL ALRSRDEHGK 240 KSSFGYDDED DQMMLSDDDD EDDEFNDDIE VSAEDHHHRS HGAKRLKFDH EETQFGSHLS 300 EVAAIDMNKM FCEGLGGPSA EKNPPGMHEI QIEKHRLKIK TQMLKIEQRH LKWLRFSKEK 360 DRELQMMRLE NEKMRLENER LELELKLKEI EMGVKPKKI

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MEGNLPPRTL IPGAPFDLEA SMHSQQQPFH FAQPQLHQGM FPVPATIPMQ DLGNVVKTSL  60
SDDEDADDGH HHDRGGKVAS QWHRVKWTSD MVKLLVSAVS YIDEDVEMDY GTSNGRRKHA  120
MLKRKGKWKL VSTAMTDRGF AVSPQQCEDK FNDLNKRYKR LTEILGRGTS CQVVEHPPLL  180
EGMSLSGKLK EEARKLLSSK HLHYEEMCSY HNRNRLCLLD DPVLQKSLRL ALRSRDEHGK  240
KSSFGYDDED DQMMLSDDDD EDDEFNDDIE VSAEDHHHRS HGAKRLKFDH EETQFGSHLS  300
EVAAIDMNKM FCEGLGGPSA EKNPPGMHEI QIEKHRLKIK TQMLKIEQRH LKWLRFSKEK  360
DRELQMMRLE NEKMRLENER LELELKLKEI EMGVKPKKI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002648G0060

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096890	0.0	FP096890.1 Phyllostachys edulis cDNA clone: bphyem211a14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757160.1	0.0	uncharacterized protein LOC100828617
TrEMBL	A0A0A9DXA8	0.0	A0A0A9DXA8_ARUDO; Uncharacterized protein
STRING	BRADI3G45300.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	5e-70	sequence-specific DNA binding transcription factors