PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01002627G0250

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 382aa MW: 41285.4 Da PI: 6.6146

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002627G0250	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	204	251	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sL+ PH01002627G0250 204 SHSLAERVRREKISQRMKLLQDLVPGC----NKVIGKALMLDEIINYVQSLE 251 8***********************9....677*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.41E-9	198	255	No hit	No description
SuperFamily	SSF47459	2.75E-16	198	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.116	200	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-16	200	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-6	204	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-9	206	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MDSDYVASLL TSSSSCAPVL DFGAPLLERA ARMSGGGGLY GVTGVATGNG ELGDSREGSS 60 VSDPAWAHAR DANARKRKAP AGTSTGKCKV AACLSSSPCK VWSYSFVRRG ILPWTSLLVF 120 LMCYSHAEYV VGFGLQVGDA KGPDAKKCKM EQSPVKLKVE ETASDSSFGD RGRKQGKGNN 180 SKPAVEPPKD YVHVRARRGQ ATDSHSLAER VRREKISQRM KLLQDLVPGC NKVIGKALML 240 DEIINYVQSL EQQVEFLSMK LATVNPQLDF SNLSTLLHKD MYQACGPSVS SVFPWESAGA 300 AFPFCDQADV YQSFGSGTME SQCSLGLLDT ALPHTANTQY AFQKQQMDFW EEDLQTVLHM 360 DNEQSQENGV SAPNFDGSYN G*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MDSDYVASLL TSSSSCAPVL DFGAPLLERA ARMSGGGGLY GVTGVATGNG ELGDSREGSS  60
VSDPAWAHAR DANARKRKAP AGTSTGKCKV AACLSSSPCK VWSYSFVRRG ILPWTSLLVF  120
LMCYSHAEYV VGFGLQVGDA KGPDAKKCKM EQSPVKLKVE ETASDSSFGD RGRKQGKGNN  180
SKPAVEPPKD YVHVRARRGQ ATDSHSLAER VRREKISQRM KLLQDLVPGC NKVIGKALML  240
DEIINYVQSL EQQVEFLSMK LATVNPQLDF SNLSTLLHKD MYQACGPSVS SVFPWESAGA  300
AFPFCDQADV YQSFGSGTME SQCSLGLLDT ALPHTANTQY AFQKQQMDFW EEDLQTVLHM  360
DNEQSQENGV SAPNFDGSYN G*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002627G0250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651378.1	1e-155	transcription factor BHLH089-like
Swissprot	Q9CAA9	2e-54	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A0E0B4W8	1e-154	A0A0E0B4W8_9ORYZ; Uncharacterized protein
TrEMBL	Q0J0S0	1e-154	Q0J0S0_ORYSJ; Os09g0501600 protein
STRING	OGLUM09G16010.1	1e-155	(Oryza glumipatula)
STRING	OS09T0501600-01	1e-155	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	6e-57	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]