PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002550G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 615aa    MW: 67089.5 Da    PI: 7.0125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002550G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11460506455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L   + YI +Lq
  PH01002550G0330 460 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDSITYITDLQ 506
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.9E-5056241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.412456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-18459521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-14459510No hitNo description
Gene3DG3DSA:4.10.280.104.5E-18460518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9460506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MEIEEDGANG GTGWAWTEED RALSATVLGT DAFAYLTKGG GAISEGLVVA SLPVDLQNKL  60
QELVESKRPG AGWNYAIFWQ LSRTKSGDLV LGWGDGSCRE PCDGEVRATA SAGNDDAKQR  120
MRKRVLQRLH TAFGGADEED YAPGIDQVTD TEMFFLASMY FAFPHRARGP GQVFAAGVPL  180
WIPNTERSVF PANYCYRGYL ASAAGFRTIV LVPFETGVLE LGSMQQVAES SDTVHTIKSV  240
FAGASGDKAA VQRHEGNGPI ERSPGLAKIF GKDLNLGRPS AGPVVGVSKA DERSWEQRTA  300
AGGSPLLPNV QKGLQNFTWN QARGPNSHQQ RFGNGILIVS NEATHRNNGA ADNPTATQFQ  360
LQKAPQLQKL PQLQKPAQIV KPPQLVNQQQ LQPQAPRQID FSAGSSSKSG VLVARTAVLD  420
GESAEVDGLC KEEGPPLAVE DRRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR  480
AVVPNISKMD KASLLGDSIT YITDLQKKLK EMEAERERFL ESGMVDPRER APRPEVDIQV  540
VQDEVLVRVM SPMENHPVKE VFQAFEEAGV RVGESKVTDN NGTVVHSFII KCPGSEQQTR  600
EKMIAAMSRV TSSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27454516264Transcription factor MYC2
5gnj_B2e-27454516264Transcription factor MYC2
5gnj_E2e-27454516264Transcription factor MYC2
5gnj_F2e-27454516264Transcription factor MYC2
5gnj_G2e-27454516264Transcription factor MYC2
5gnj_I2e-27454516264Transcription factor MYC2
5gnj_M2e-27454516264Transcription factor MYC2
5gnj_N2e-27454516264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441449RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002550G0330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0952590.0FP095259.1 Phyllostachys edulis cDNA clone: bphyem203o24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643964.10.0PREDICTED: transcription factor bHLH13
TrEMBLJ3KY240.0J3KY24_ORYBR; Uncharacterized protein
STRINGOB01G18800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.32e-70bHLH family protein