PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002549G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 404aa    MW: 43438.9 Da    PI: 6.8928
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002549G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS214.94.3e-66302421219
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 
                      l++lLl+cA a ++g l +a+a+L+++  la+pdgd+mqR+aa f+eALa+r +r +++l++al  p++++  + +e++aa++ f +++P+l++
  PH01002549G0090  30 LIHLLLNCAAAAAAGRLDAANAALEHIAVLAAPDGDAMQRVAAAFAEALARRALRAWPGLCRALlLPRAAP--TPTEVAAARRHFLDLCPFLRL 121
                      689************************************************************95455444..6899999************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + ++aNq Ilea+e+e+ vH+iD++    +QW+ Ll+ La+Rpegpp+lR+T+v++    +k+ l++t+  L+k Ae+l+vpf+fn+ v++rl+
  PH01002549G0090 122 AGVAANQSILEAMESEKIVHVIDLGGADAIQWLELLHLLAARPEGPPHLRLTAVHE----HKDVLSQTAMVLTKEAERLDVPFQFNP-VVSRLD 210
                      ********************************************************....9**************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                      +l+ e+Lrvk+gEala++++lqlh ll+++ +
  PH01002549G0090 211 ALDAESLRVKTGEALAISCSLQLHCLLASDDD 242
                      **************************987655 PP
2GRAS110.71.9e-34299398275374
             GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                      ++r s er+ vEr llg+ei+n+v c gaerrerhe+le W +r+e aGF+ vpls++a  qa+++ +  + dg++v ee+g+++l+W+dr+L+
  PH01002549G0090 299 AARGSVERARVERWLLGEEIKNIVVCDGAERRERHERLEWWARRMEGAGFGRVPLSYYALLQARRVAQGLGCDGFKVREEKGTFFLCWQDRALF 392
                      578899**************************************************************************************** PP

             GRAS 369 svSaWr 374
                      svSaWr
  PH01002549G0090 393 SVSAWR 398
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.2834378IPR005202Transcription factor GRAS
PfamPF035141.5E-6330242IPR005202Transcription factor GRAS
PfamPF035146.7E-32299398IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MPLHPAAAVA SQMPPWMLRE LRSDERGLCL IHLLLNCAAA AAAGRLDAAN AALEHIAVLA  60
APDGDAMQRV AAAFAEALAR RALRAWPGLC RALLLPRAAP TPTEVAAARR HFLDLCPFLR  120
LAGVAANQSI LEAMESEKIV HVIDLGGADA IQWLELLHLL AARPEGPPHL RLTAVHEHKD  180
VLSQTAMVLT KEAERLDVPF QFNPVVSRLD ALDAESLRVK TGEALAISCS LQLHCLLASD  240
DDAAAAAAGQ AEPGVWAVPV DVPRGRVPGR AVGAVAEGDG GDGAGGEPQR ARADGAVGAA  300
RGSVERARVE RWLLGEEIKN IVVCDGAERR ERHERLEWWA RRMEGAGFGR VPLSYYALLQ  360
ARRVAQGLGC DGFKVREEKG TFFLCWQDRA LFSVSAWRGR RFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-51144002380Protein SCARECROW
5b3h_D9e-51144002380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002549G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0975350.0FP097535.1 Phyllostachys edulis cDNA clone: bphylf044j19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165765.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-130SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3B6EPZ70.0A0A3B6EPZ7_WHEAT; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.13e-53scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]