PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01002513G0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 235aa MW: 25238.4 Da PI: 6.257 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.1 | 2.9e-11 | 125 | 169 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr +r NR +A+rsR RK+++i eLe+ v +L+ e +aL ++ PH01002513G0060 125 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRV 169 899*********************************999998666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-13 | 121 | 185 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.611 | 123 | 179 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-12 | 125 | 179 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.6E-14 | 125 | 179 | No hit | No description |
Pfam | PF00170 | 5.8E-10 | 125 | 175 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.99E-22 | 126 | 176 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 128 | 143 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MAQLPPRAPS AAAQDWSAAG EFLGFAAARR GAHRRSASDS AAFLEAVPMD DVIGGDEFDR 60 LDDEQLMSMF SDVEAPAVSD GGGERAGEAQ LLDMGEAEEG MVATSPAGPR AMAAPAAADG 120 VADPKRVKRI LANRQSAQRS RVRKLQYISE LERSVTTLQM EVSALSPRVA FLDHQRSLLT 180 VGNSHLKQRI AALAQDKIFK DAHQEALKKE IERLRQLYHH QQIKATGGAD IAAAA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01002513G0060 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By white light. {ECO:0000269|PubMed:18065552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP096247 | 0.0 | FP096247.1 Phyllostachys edulis cDNA clone: bphyst038a13, full insert sequence. | |||
GenBank | FP097472 | 0.0 | FP097472.1 Phyllostachys edulis cDNA clone: bphylf047m15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828193.1 | 1e-134 | basic leucine zipper 19-like | ||||
Swissprot | Q6K3R9 | 1e-106 | BZP19_ORYSJ; Basic leucine zipper 19 | ||||
TrEMBL | A0A0A9FPX7 | 1e-145 | A0A0A9FPX7_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ab01112.1.p | 1e-130 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1322 | 38 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58120.1 | 1e-54 | bZIP family protein |