PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002420G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 401aa    MW: 42339.1 Da    PI: 6.2244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002420G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.23.8e-052943311254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  PH01002420G0050 294 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 331
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-8292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-10292350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.82E-5292334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGDHEMMHAA PAMYSGGGGG GSGTDTHGIW WNTAAPAATC STELAGTFST WSSAPAASYD  60
MAADGSKAMS TTTASSESPG NNSSITFQEP TSTPDPSGVA AVPLPALAGF TDWNHPFMNS  120
GASLHGFLQD GHQDISSRTD QSHINALSLM NPSSNNLELH GQHEQDHHQL LSNLGSELLL  180
SPTSPYGFQS SLLRSLMEPA AKPALPGFQQ YQYQQMGQST QAARFAPAGV REPLQFWNPS  240
AGFGMAAAAP DQASTALEGV GDSSSIITKR ANGELAFKKP RLETPSPLPT FKVRKEKLGD  300
RITALQQLVS PFGKTDTASV LHETIEYIKF LHDQAGALSA PYLKNGHQVP HLKSSSPDKS  360
KDGELSLKGR GLCLVPISST FAVASEVPVD FWIPFGANFR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002420G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8327011e-151CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976935.10.0transcription factor bHLH112
TrEMBLA0A1E5VU630.0A0A1E5VU63_9POAL; Transcription factor bHLH112
STRINGSi010139m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.35e-49bHLH family protein