PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002348G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 553aa    MW: 58175.9 Da    PI: 9.7468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002348G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0598120123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  PH01002348G0180  98 FVCEVCNKGFQREQNLQLHRRGH 120
                      89*******************88 PP
2zf-C2H212.60.00042174196123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H +t+
  PH01002348G0180 174 WKCDKCSKRYAVQSDWKAHSKTC 196
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-697120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-797120No hitNo description
PROSITE profilePS5015711.09498120IPR007087Zinc finger, C2H2
SMARTSM003550.004198120IPR015880Zinc finger, C2H2-like
PfamPF121713.6E-598120IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SMARTSM00355300139169IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.9E-5162195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-7169194No hitNo description
SMARTSM00355140174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MSMAYLSRTQ NSEISAKDAC VSHAWDPCTR PYIGESQPAL ATTPTSTIPR PGDILNSKAG  60
RVQKRRKGKQ QAGRVPGPDP DAEVIALSPR TLMATNRFVC EVCNKGFQRE QNLQLHRRGH  120
NLPWKLKQKN PKETRRRVYL CPEPTCVHHD PSRALGDLTG IKKHYCRKHG EKKWKCDKCS  180
KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS SRRDSFITHR AFCDALAQES ARMPPIGAGL  240
YGSSGNMTLG FSGMAPQMSG FPEQAGQSSA SASQFEHIMP SSSGPSMFRS QASSSSFYLG  300
GAAHPTAQDF PEDGQSQVGQ GSLLHGKPAA FHSLMQLPEQ HQPSSNGNLL NLGFFSGNSG  360
GTTGGQDARL VFRDQFNSNT GNGSGGNSTA DQGSIVTSGS LVSNHLGGAG AGFPSLYNPS  420
ESARPPQMSA TALLQKAAQM GATTSSHNVG GGASSLFRGP GIRAGEGLAN ERQFQNLIMN  480
SLASGSGGAA AFGGSFSGAT GFGSVDDGKL STRDFLGVSG AVQGMSGSGA MGPPRHGAAG  540
LHIGSLDPAE MK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-33170233365Zinc finger protein JACKDAW
5b3h_F8e-33170233365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002348G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011810.0AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612461.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612462.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612463.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612465.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612466.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-117IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLB7ERE70.0B7ERE7_ORYSJ; Os09g0555700 protein
STRINGOS09T0555700-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-105indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]