PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002321G0340
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 325aa    MW: 37933.7 Da    PI: 9.7344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002321G0340genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.61.5e-2028115299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      fkv+     + + r+++p kfa+++ g+    +t++le+ +g +++v++  +k+ +++v+++GWk Fv+a++Lk gDf+vFk+ + s+   +v 
  PH01002321G0340  28 FKVM--IGDF-RERMTIPDKFAQHFRGE---LTTIKLESCNGCTFDVQV--TKNLDKVVFQSGWKAFVSAHDLKLGDFLVFKYGRISQL--KVL 111
                      5666..4444.457********666544...569***************..*******************************9554666..999 PP

                      EE-S CS
               B3  96 vfrk 99 
                      +f+ 
  PH01002321G0340 112 IFDP 115
                      8875 PP
2B353.73.7e-172403231299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + + l l++k+a+++   k  ++tl+   ++ +sW+v++++ +++s+r  + +GW++F+++n+L+ gD ++F+l +r++   + +++r+
  PH01002321G0340 240 SPCFLDLSRKYADAYLPHK--EQTLM-LKRHDKSWKVQFCInKNNSKR--FYQGWRKFAHDNNLQIGDLCLFELLKRKKYVVNTHIIRR 323
                      448899******9995333..33566.556*********884555555..558********************9998887777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-2222120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-2222118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.13924116IPR003340B3 DNA binding domain
CDDcd100171.00E-2225114No hitNo description
SMARTSM010191.2E-927116IPR003340B3 DNA binding domain
PfamPF023626.1E-1827114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-22220320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19221316IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.055229324IPR003340B3 DNA binding domain
CDDcd100173.20E-16231322No hitNo description
SMARTSM010192.2E-11232324IPR003340B3 DNA binding domain
PfamPF023624.7E-15242323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSKLYDKCKE RNEYHYWNHT GDQHKHFFKV MIGDFRERMT IPDKFAQHFR GELTTIKLES  60
CNGCTFDVQV TKNLDKVVFQ SGWKAFVSAH DLKLGDFLVF KYGRISQLKV LIFDPSGCEK  120
LPLCAMKNAS HVRQRWEKPI DISSSCHDLP TKSPQSERNA TAHKDRLSQG NKIIDISSSS  180
TPSEMSDYDV EEHFVPSCIL PRGTRLTEVQ QKKMEEKVQA IHSRTPIYGC IMTKCNVFGS  240
PCFLDLSRKY ADAYLPHKEQ TLMLKRHDKS WKVQFCINKN NSKRFYQGWR KFAHDNNLQI  300
GDLCLFELLK RKKYVVNTHI IRRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002321G0340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880059.11e-113putative B3 domain-containing protein Os03g0621600 isoform X2
SwissprotQ851V51e-106Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0D9VWG61e-122A0A0D9VWG6_9ORYZ; Uncharacterized protein
STRINGLPERR03G21790.11e-123(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-28B3 family protein