PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002246G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 266aa    MW: 27256.5 Da    PI: 7.8345
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002246G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.21.4e-4335133199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC++dC++apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++l
  PH01002246G0050  35 PCAACKFLRRKCQPDCMFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDL 128
                      7********************************************************************************************9 PP

           DUF260  95 allke 99 
                       +++ 
  PH01002246G0050 129 TRARY 133
                      98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.88934135IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4335131IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASSSASSVP LSTGSVIAVA SSSAVGASSG STGSPCAACK FLRRKCQPDC MFAPYFPPDN  60
PQKFVHVHRV FGASNVTKLL NELHPYQRED AVNSLAYEAD MRLRDPVYGC VGVISVLQHQ  120
LRQLQQDLTR ARYELSKYQA AAVAAAPSSV GSNGPPSMAD FIGNTVPNCT QNFINISHST  180
AAAIGAVSGG TGFGHDQFAA VQMLARSYEG ESTMARLGVN GGGGYDFGYS SAMGGGPVSG  240
LGPLGGGPFL KPGTAGGDER PTAAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-54331509126LOB family transfactor Ramosa2.1
5ly0_B3e-54331509126LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002246G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1349331e-127AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence.
GenBankAC1376171e-127AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence.
GenBankAP0149611e-127AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187374.11e-132LOB domain-containing protein 6-like
RefseqXP_020194956.11e-132LOB domain-containing protein 6-like
SwissprotQ32SG31e-123LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A3B5ZW051e-130A0A3B5ZW05_WHEAT; Uncharacterized protein
TrEMBLA0A452Z4E71e-130A0A452Z4E7_AEGTS; Uncharacterized protein
STRINGEMT222971e-129(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.44e-55LBD family protein