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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PH01002160G0050 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family |
Trihelix |
Protein Properties |
Length: 306aa MW: 33211.3 Da PI: 6.3792 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PH01002160G0050 | genome | ICBR | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 45.9 | 1.5e-14 | 13 | 72 | 28 | 86 |
trihelix 28 kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
+W+ vs++ r++g+er+p qC+++w nl+++ kki ++ek++ ++++ +++ f +++
PH01002160G0050 13 RLKWAVVSAYSRRHGVERGPMQCQKRWGNLSWDLKKIVAWEKNGaAAGEAQQHESFWDMR 72
679*****************************************6688889999999985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MEQRGLRSPQ PVRLKWAVVS AYSRRHGVER GPMQCQKRWG NLSWDLKKIV AWEKNGAAAG 60 EAQQHESFWD MRGEQRRARQ LPSSFDREVF NALVGAAAKL PPDLGEELAE GDDEADGQPP 120 MMVMPISATK YEPPASSQHE CSDPVTERAK KAGAASDKNS TSQQDGGFKD SEATFGPGAG 180 AEGTTTATAT ATTTSIGKQV IEALETGNRM HADQLEAQKA SWDMDREQRK ALLACLSKLA 240 DAVGRIADKL DQSIRLSAYV IDLLLLLARD QSVRLSAITT LKSVQVNGIQ PEHFVGPKMR 300 LEGGE*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012609 | 3e-61 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |