 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PH01002092G0300 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
Family |
MYB |
Protein Properties |
Length: 387aa MW: 42365.7 Da PI: 4.8134 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PH01002092G0300 | genome | ICBR | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd++lv +G +W+ +++ g+ R++k+c++rw +yl
PH01002092G0300 14 RGPWTAEEDQKLVSFLFSHGHCCWRIVPKLAGLLRCGKSCRLRWTNYL 61
89******************************99************97 PP
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2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+++E++l +d+++qlG++ W++Ia++++ gRt++++k+ w+++
PH01002092G0300 70 LSEDEEKLVIDLHAQLGNR-WSKIAARLP-GRTDNEIKNLWNTH 111
589****************.*********.***********997 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MGRQPCCDKV GLKRGPWTAE EDQKLVSFLF SHGHCCWRIV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEDEEKLVID LHAQLGNRWS KIAARLPGRT DNEIKNLWNT HIKKKLKKMG 120 IDPITHQPVA PVQSDPLKIQ QEQQRRDPPE AQEHLDEAKP SSQEPAGSGA GAYDEEAAPV 180 SAEPKGVTCS TSSASASASA VSPSCSSSSA SASVATPGAD VEWPDPIDLF EVDGVMDMDW 240 DSILSGCGGD GGGISVDLFD HYSDVGFDQE VKKLHQEKQL CMMVDKDLGS TYDRVELEEM 300 VQVALLCTQY YPSHRPKMSE VIRMLEGDGL TEKWEASQNV DTSKSISSEL LSPKFMDFAA 360 DESSLGPEAM ELSGGRTRQQ EASISI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK108709 | 1e-144 | AK108709.1 Oryza sativa Japonica Group cDNA clone:002-150-A10, full insert sequence. |