PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C2H2

Protein Properties

Length: 426aa MW: 45671.8 Da PI: 8.462

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01002076G0110	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	397	419	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H PH01002076G0110 397 VCPKCSKGFRDPVLLVEHVERdH 419 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	4.71E-5	6	33	No hit	No description
Gene3D	G3DSA:4.10.1110.10	2.2E-10	227	289	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	1.96E-9	229	283	No hit	No description
Pfam	PF01428	8.6E-8	237	276	IPR000058	Zinc finger, AN1-type
SMART	SM00355	2.3	359	382	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	361	382	IPR007087	Zinc finger, C2H2
SMART	SM00355	9.3	396	419	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	398	419	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MGTPEFPDLG RHCSVGDCNQ IDFLPFSCNR CDHTSESSLV SSSLSREQGL ERGRERERGK 60 ASAGDGFKSR PRGDSGGDVE PSRKTLDSAV AEGTGLAPMQ PKWSSQEDGG EGISSGSSQP 120 LPSSPIPAEP AATAAIPPQG AAAMTSSSPC RGSPSPSSPR AFPTSASTLV FCLQHRSYTS 180 HKCPNANQKD ATVLICPLCA KGVRLNPNED PNITWESHVN TDCDPSNYQK VTKKKKCPVA 240 GCRETLTFSN TIRCKDCSKE HCLKHRFGPD HKCPGPRKLE STFPFANMLR RSQKVETRSN 300 SSNNSSSRWR SSLLNAASNF RSSAEAGMQK LSTATSQAFQ KAKDGISPNS SSNSSDLVEQ 360 CVHCPARFST VGALIEHAEK FHQNNSQSSR TGVTIDVCPK CSKGFRDPVL LVEHVERDHG 420 GTSRA*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MGTPEFPDLG RHCSVGDCNQ IDFLPFSCNR CDHTSESSLV SSSLSREQGL ERGRERERGK  60
ASAGDGFKSR PRGDSGGDVE PSRKTLDSAV AEGTGLAPMQ PKWSSQEDGG EGISSGSSQP  120
LPSSPIPAEP AATAAIPPQG AAAMTSSSPC RGSPSPSSPR AFPTSASTLV FCLQHRSYTS  180
HKCPNANQKD ATVLICPLCA KGVRLNPNED PNITWESHVN TDCDPSNYQK VTKKKKCPVA  240
GCRETLTFSN TIRCKDCSKE HCLKHRFGPD HKCPGPRKLE STFPFANMLR RSQKVETRSN  300
SSNNSSSRWR SSLLNAASNF RSSAEAGMQK LSTATSQAFQ KAKDGISPNS SSNSSDLVEQ  360
CVHCPARFST VGALIEHAEK FHQNNSQSSR TGVTIDVCPK CSKGFRDPVL LVEHVERDHG  420
GTSRA*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01002076G0110

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099194	0.0	FP099194.1 Phyllostachys edulis cDNA clone: bphyem101c06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001106258.2	1e-150	AN1-type zinc finger protein 2B
Refseq	XP_002460884.1	1e-150	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-144	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A3L6QU76	1e-150	A0A3L6QU76_PANMI; AN1-type zinc finger protein 2B
STRING	Pavir.J03938.1.p	1e-157	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	2e-91	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]