PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002021G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 374aa    MW: 38640.2 Da    PI: 4.631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002021G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08267309754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ r+RR+ri +++  L+ l+P  a      K++ a++L +Av+Y++ L
  PH01002021G0090 267 AAARQRRERISERLRVLQNLVPGgA------KMDTASMLDEAVNYLRFL 309
                      567*******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14265320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-12266318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-12266314No hitNo description
PfamPF000108.8E-6268309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDHYFDDMIL SESAWSGAGG GDSGAVVLPP EVGVDGSGMT VLERLLLDEA LAAAILELQG  60
IQAPCGGKVV PSPAGAYAAM ETTTPAYADV EGDVLQRQQH HHRYQGARGM AADYLTPTAP  120
AVTLSTVPPA FAIATTVDGG IVDAAAISGN DATDAPSVEN PLCSLLASTT TGDGGIQIAF  180
STGGPGPAAK RANPSLSSTS ASISFDCRSS GNGGEDPRYE PDTEALAQVK EMIYRAAAMR  240
PVTLGAEDSG ERPRRRNVRI SSDPQTAAAR QRRERISERL RVLQNLVPGG AKMDTASMLD  300
EAVNYLRFLK SQVRELQTLD LRNYANAMVN AGTPAMAAAA GPLSYSNGNG MPAFAFPAAA  360
ETLAGGGVHE HLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01002021G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-131AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-131AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-131AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-131CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201013.11e-115transcription factor SPATULA-like isoform X1
RefseqXP_020201014.11e-115transcription factor SPATULA-like isoform X2
TrEMBLA0A1E5ULC61e-122A0A1E5ULC6_9POAL; Transcription factor bHLH87
STRINGONIVA01G07440.11e-117(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-33bHLH family protein