PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001950G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 936aa    MW: 103566 Da    PI: 6.2634
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001950G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.21.8e-05697757154
                      TT--SS--HHHHHHHHHH..HHHSSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeel..FeknrypsaeereeLAkkl.....gLterqVkvWFqNrRak 54 
                      rrkRt ++++q++e e++  +e +++ +a+  +  A+kl     ++t +q k+W  Nr+ak
  PH01001950G0130 697 RRKRTIMNDKQVNEIEKAliYEPEMHKNATLLQAWAEKLsgqgsEITSSQLKNWLNNRKAK 757
                      89***************83355566667778899999999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-5677758IPR009057Homeodomain-like
SuperFamilySSF466898.05E-5687760IPR009057Homeodomain-like
PROSITE profilePS5007110.527694761IPR001356Homeobox domain
CDDcd000860.00233697760No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MELTLRIRMI DMVSAIEELS GLSTRELSEM LKESENFVLQ SKTEDGGPKQ VDMEKLVSSL  60
PRHLLAVLLD DVKLSEQVMD LIFFVLSILS HWKKENHLGA SPFVHSSLVA ASLHLLTSYF  120
SSQWHELVHI LLAHPKVDIF MDVAFDSLHE DVRSLSVRLS TLGTDVFPVG PFDSRLTHFI  180
CQQCEASLQF LLLLCQQKLF RDRILKNKEL SRNGGILSLS RTILKLGIPE SLKGSIDIAA  240
SVSRLKSKIL SILLQLCEAE SVSYLDEVAT SPKSMQLGQA LALEVLDLLK TAFGKKQKLT  300
ANSHDKSYPM GSVLISALRL VDVFSDDSNF RSSFITNTIP FLTQILAIPH DEFVLSWCSV  360
NLPVIKEDAN LDYDPFGAAE LALVAAANKL TEAKANYSCP FRPISMPSIA YAQTRTSCVV  420
KIIANLHVFV PNICEGSLSE YSKSLIPNNL LNEEDVQLLS EFAYKLQTWC KSQVGQSTLQ  480
VVTATLATTV PKGRQAGIEI PAGNRRLPAG YRLPEGGRDT GSRPVVKSDT ASEGKEDLKP  540
VQEPLPTRAS APDSDMNNFP KDVQNMEEST LTPSMKQEGN ARVETPRNCV TINGGFLQNS  600
VGQDLVHLGV TRTTSTGYLG VSTATSTGLQ RCKMDLDPAS SSMDHFKTPE PTKESVLQDD  660
EKGDTNMYDE RQPKRRSVLQ DDEKGDTNMY DERQPKRRKR TIMNDKQVNE IEKALIYEPE  720
MHKNATLLQA WAEKLSGQGS EITSSQLKNW LNNRKAKLAR IAKERGVPSE GENADRPSTP  780
ATPHLGDSSE SAGEESYLPP ARVMSALGIS KGSRLVSPDS NEPTSLAEFT QNIILSRPFT  840
RSFSFEPGRL VLLIDNDGKE VGRGKIFQVE GRAQGKSLTE SRICVVDVTE LKIEKWREIP  900
HPSEASGRTF QEAEWRNGGV MRVAWDVIRL SPVVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001950G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115270.0AK111527.1 Oryza sativa Japonica Group cDNA clone:J013021F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654130.10.0PREDICTED: nodulin homeobox
TrEMBLJ3M4M80.0J3M4M8_ORYBR; Uncharacterized protein
STRINGOB05G15520.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51261418