PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001910G0100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | SBP | ||||||||
Protein Properties | Length: 348aa MW: 38417.5 Da PI: 8.6459 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.9 | 3.9e-40 | 123 | 201 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hsk pvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ PH01001910G0100 123 RCQAEGCKADLSSAKRYHRRHKVCEHHSKVPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 201 6******************************98725689*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.6E-33 | 118 | 186 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.06 | 121 | 199 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.11E-37 | 122 | 202 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-30 | 124 | 198 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDQVSSIQRE QLGYNLEANS LALLPPSNAA HHTTIAHAPH DILQFYPTSQ YLTGNPYSHF 60 TGSTFQSYYQ QAQAPPEYYF PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH 120 PPRCQAEGCK ADLSSAKRYH RRHKVCEHHS KVPVVVTAGG LHQRFCQQCS RFHLLDEFDD 180 AKKSCRKRLA DHNRRRRKSK PSDADAADKR RAQANKAATT KDKAGSSSKS TGTGDGLQTQ 240 VLGSAHLSKD QDHNMGLGEV VKEVVDPKGK ASMQQQAHHG LHQQSHLGFP FPSSSGSCFP 300 QSQAVSSTDN TSNIAQVQEP SLAFHQHHQH SNILQLGQAM FDLDFDH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-26 | 124 | 198 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 210 | RRRRKSKPSDADAADKRR |
2 | 194 | 199 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001910G0100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB776991 | 0.0 | AB776991.1 Oryza sativa Japonica Group LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, cultivar: Nipponbare. | |||
GenBank | AK068104 | 0.0 | AK068104.1 Oryza sativa Japonica Group cDNA clone:J013129G14, full insert sequence. | |||
GenBank | JX462783 | 0.0 | JX462783.1 Oryza sativa Indica Group cultivar Teqing PAC1 mRNA, complete cds. | |||
GenBank | JX462784 | 0.0 | JX462784.1 Oryza rufipogon strain C4 PAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960135.1 | 0.0 | protein LIGULELESS 1 | ||||
Swissprot | Q01KM7 | 0.0 | SPL8_ORYSI; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A3S6H5M9 | 0.0 | A0A3S6H5M9_9POAL; Squamosa-promoter binding protein-like protein (Fragment) | ||||
STRING | Si022315m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 6e-41 | squamosa promoter binding protein-like 8 |