PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001883G0330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | WRKY | ||||||||
Protein Properties | Length: 325aa MW: 34339.3 Da PI: 5.5092 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.8 | 1.7e-26 | 140 | 199 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ gs++prsYYrCt++ gC++kkkv+r ++dp + e+tY g+H + PH01001883G0330 140 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGTHAC 199 8***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-26 | 134 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-24 | 136 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-36 | 139 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.379 | 140 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 140 | 199 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MDEVVLQITE AFRLASELMS ELPATQNDPA YLAERCHGIV HAYNRAIRVL HPHGVGVDMA 60 AAAPPQFTGE SRGYRPPLDL LRLCCPEDHA GASPFLGAPS PHLGRLQESF HAPADMFGAR 120 ADAGTSSGGP RTGNTELPPD DGYTWRKYGQ KDILGSRYPR SYYRCTHKNY YGCEAKKKVQ 180 RLDDDPFTYE VTYCGTHACL TSTTPLLTLP AAAAATGAAA AVTNSPTAAT ASVLAPDLVM 240 APTEQTSPAA LSTSIHLGIS WMPDSFQGIG SGAGEGNSAQ VNVSTAARDT DYPVMDLADV 300 MFNSGSSGGS SMDGIFPAHD RRDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-21 | 140 | 199 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001883G0330 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287817 | 9e-96 | AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198551.1 | 1e-121 | uncharacterized protein LOC109784377 | ||||
TrEMBL | A0A446JZC4 | 1e-122 | A0A446JZC4_TRITD; Uncharacterized protein | ||||
STRING | EMT32446 | 1e-120 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 3e-34 | WRKY DNA-binding protein 55 |