PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001883G0330
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 325aa    MW: 34339.3 Da    PI: 5.5092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001883G0330genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.7e-26140199258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp + e+tY g+H +
  PH01001883G0330 140 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPFTYEVTYCGTHAC 199
                      8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-26134199IPR003657WRKY domain
SuperFamilySSF1182903.01E-24136199IPR003657WRKY domain
SMARTSM007748.6E-36139201IPR003657WRKY domain
PROSITE profilePS5081121.379140197IPR003657WRKY domain
PfamPF031061.5E-24140199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDEVVLQITE AFRLASELMS ELPATQNDPA YLAERCHGIV HAYNRAIRVL HPHGVGVDMA  60
AAAPPQFTGE SRGYRPPLDL LRLCCPEDHA GASPFLGAPS PHLGRLQESF HAPADMFGAR  120
ADAGTSSGGP RTGNTELPPD DGYTWRKYGQ KDILGSRYPR SYYRCTHKNY YGCEAKKKVQ  180
RLDDDPFTYE VTYCGTHACL TSTTPLLTLP AAAAATGAAA AVTNSPTAAT ASVLAPDLVM  240
APTEQTSPAA LSTSIHLGIS WMPDSFQGIG SGAGEGNSAQ VNVSTAARDT DYPVMDLADV  300
MFNSGSSGGS SMDGIFPAHD RRDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21140199968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001883G0330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878179e-96AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198551.11e-121uncharacterized protein LOC109784377
TrEMBLA0A446JZC41e-122A0A446JZC4_TRITD; Uncharacterized protein
STRINGEMT324461e-120(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-34WRKY DNA-binding protein 55