PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001876G0340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 27546.3 Da PI: 5.2122 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.4 | 4e-11 | 137 | 184 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RRd+i +++ L++l+P + +k Ka++L + ++YI+ L+ PH01001876G0340 137 SHSLAERARRDKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALE 184 8*************************9....677***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.38E-11 | 131 | 188 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-17 | 131 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-18 | 133 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.19 | 133 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-8 | 137 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-11 | 139 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDPAPTLTAE LWRPPHLAAA GDVGGRAVEA SSAVTGQSND IRGRGAGRRR QRESAASEDD 60 SSRLVSTSGG GGQDLADSEV KRFKAIKSSG DDGSLRTEAE ADSRNTSNTI DQNPPPAEPP 120 KQDYIHVRAR RGQATDSHSL AERARRDKIS ERMKILQDLV PGCNKVIGKA SVLDEIINYI 180 QALERQVEFL SMKLEAVNAD VNNGIEAFPS KDLGAQTYNT APGLTFDPQT PREYGQGSTA 240 SEWLHMQIGG AYESVT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001876G0340 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094960 | 0.0 | FP094960.1 Phyllostachys edulis cDNA clone: bphyem119a09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796030.1 | 1e-132 | transcription factor BHLH089-like | ||||
Swissprot | Q84T08 | 1e-126 | BH089_ORYSJ; Transcription factor BHLH089 | ||||
TrEMBL | A0A2S3IH30 | 1e-131 | A0A2S3IH30_9POAL; Uncharacterized protein | ||||
STRING | ORGLA03G0344800.1 | 1e-131 | (Oryza glaberrima) | ||||
STRING | OBART03G37850.1 | 1e-131 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 1e-67 | BIG PETAL P |
Publications ? help Back to Top | |||
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