PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001800G0280
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 379aa    MW: 40455.4 Da    PI: 7.0927
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001800G0280genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-08117137526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C +aHg
  PH01001800G0280 117 ACPDFRK-GGCKRGDACEYAHG 137
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5116139IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6117137IPR000571Zinc finger, CCCH-type
SMARTSM0035612147170IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258147171IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMMMGEGVSV PPWGSLPVSG VDVGGGAAGD EMTPYLLAAL RQYLPSNDVG VSADDEEEAA  60
LGAAVDAYAC DEFRMYEFKV RRCARGRSHD WTECPFAHPG EKARRRDPRK YHYSGTACPD  120
FRKGGCKRGD ACEYAHGVFE CWLHPARYRT QPCKDGTACR RRVCFFAHTP DQLRVLPPQQ  180
SSPRSAASSP LAESYDGSPL RRQAFESYLS KSIMSSSPTG TLISPPKSPP SESPPLSPGE  240
AGVILRGSWP GVGSPVSDVL ASLRQLRLSK AHSAPSGGWS AYPSSVVSYG SPKAAGLYSL  300
PSTPRATTAT VTTASSLMPN LEPLDLGLID EEQPVERVES GRALREKVFE RLSRDGAGSS  360
NAAAGAGGPD VGWVCDLIN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001800G0280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961410.0FP096141.1 Phyllostachys edulis cDNA clone: bphyem209h03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879384.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0E0MSJ10.0A0A0E0MSJ1_ORYRU; Uncharacterized protein
TrEMBLA2WLL60.0A2WLL6_ORYSI; Uncharacterized protein
TrEMBLB7EQW00.0B7EQW0_ORYSJ; C3H transcription factor
STRINGORUFI01G06440.10.0(Oryza rufipogon)
STRINGOS01T0192000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-85C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]