PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001789G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YA
Protein Properties Length: 268aa    MW: 29162.6 Da    PI: 9.6829
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001789G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.72.2e-29130192158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksr......kpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+r      k ylheSRh+hA+rR+Rg+gGrF
  PH01001789G0250 130 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKTRksfqdfKAYLHESRHQHAMRRARGTGGRF 192
                      69***************************8.555513333468********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-33128195IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.189129195IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-26131192IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860134154IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALQPWWTGS GLGAVSPAVV APGSGAGISL SSNPVGGGGG GATKGAQGKT NDDARGESSE  60
DSRRSGEPKG HAHSIIYVQI LSALYASATY QYPDAYYTGM VGPYGTQAVT HFQLPGLTHS  120
RMPLPLEVSE EPVYVNAKQY HGILRRRQSR AKAELEKKVV KTRKSFQDFK AYLHESRHQH  180
AMRRARGTGG RFLNTKKNEN GSPNEKAGPN KGNTDCFTIR WYASQIEETI DSRCISISDK  240
LLWDSLGEQN SEHHRVPPDL QLLQKEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-19130204268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001789G0250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880302e-62AB288030.1 Oryza sativa Japonica Group OsHAP2D mRNA for HAP2 subunit of HAP complex, complete cds.
GenBankAK0698542e-62AK069854.1 Oryza sativa Japonica Group cDNA clone:J023036P10, full insert sequence.
GenBankEU8470122e-62EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560983.11e-110nuclear transcription factor Y subunit A-4
RefseqXP_010231280.11e-110nuclear transcription factor Y subunit A-4
RefseqXP_014752975.11e-110nuclear transcription factor Y subunit A-4
RefseqXP_014752976.11e-110nuclear transcription factor Y subunit A-4
TrEMBLI1GPC21e-109I1GPC2_BRADI; Uncharacterized protein
STRINGBRADI1G11800.21e-110(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-38nuclear factor Y, subunit A9