PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001759G0450
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 903aa    MW: 98024.5 Da    PI: 8.0135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001759G0450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000747077441355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  PH01001759G0450 707 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 744
                      67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-2137167IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.525694743IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-4707755IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MAVSGAAKGG RERGKKVGVN KATKRSKARE KHERFNSKNH LVWEDGYCGR TSCPAGSEAS  60
EALGAKVGCA AADTMCSLVK KVMASQVHVV GQGTVGRAAF TGNHQWIVHG AANDHGLSSE  120
VAAEMNIQFR VGIQTIAIIP VLPRGVLQLG STAVVVENTN FVMHAKKLCS QLNNRSSMAV  180
SASVKNASSP QGQSRPLHGT PNVHSAYNCS KVFSQFPMTC EQYSRADTAT VSSNTSLLMV  240
AQQNGWAVRD HIVYAKPDAR FVQQASYSDS RLGSNAQSVA MSSGLISSSL TSVKKQPVLM  300
NNIQQLEFGN GADSFADLPR NVLLKSLVYR NPFILENTNI NLSHGRDEVS NEINGSGNFD  360
FVPGGARVVR ANLRTSTSSQ VLDRRTHSTS GMLLQKQPPV SCNAPQSSEF TMKMGSPERG  420
TFQAPAALSS ESGVQVSNCL NTGISQENQL SRSNHSRQDQ KVNSVNDPSV TVSTQGMKTM  480
DGCMLPGMPN ERASSLLFEP TADNDLFDIL GPKFDQLCNN VGADLVPWSD AKSQSSDRDV  540
PESSIYLDSS PLFSSLDNEF PYSGTFSLTD TDQLLDAVIS NVNPGGKQSS DDNTSCKTSL  600
TDIPSTSYLW SKELKQCDSS GVPSTLIKHE SAQFVKQPCY FDKAEDGCLS QNNGMHKSQI  660
RLWIESDQNM KCESASASSS KGIDTPSKAN RKRSRPGESP RPRPKDRQLI QDRIKELREM  720
VPNGAKCSID ALLEKTVKHM LFLQSVTKHA DKLKDSTESK ILGGENGPLW KDYFEGGATW  780
AFDVGSQCMT CPIIVEDLDR PRQMLVEMLC EDRGIFLEIA DFIKGLGLTI LRGVMEARKS  840
KIWARFTVEA NRDVTRMEIF LSLVRLLEPN CDSSGAAENA NNVNMPLGLV HQPVIPATGR  900
IQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001759G0450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0transcription factor LHW isoform X1
TrEMBLA0A0E0MCQ20.0A0A0E0MCQ2_ORYPU; Uncharacterized protein
STRINGOPUNC11G03540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-44conserved peptide upstream open reading frame 7