PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001751G0380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family SBP
Protein Properties Length: 336aa    MW: 36541 Da    PI: 8.9664
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001751G0380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.21.5e-40108185177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +Cq+egC+adls ak+yhrrhkvCe h+ka+vv+ + g++qrfCqqCsrfh+l+efDe+krsCr+rLa+hn+rrrk++
  PH01001751G0380 108 RCQAEGCKADLSGAKHYHRRHKVCEYHAKAAVVVaAGGKQQRFCQQCSRFHALTEFDEAKRSCRKRLAEHNRRRRKPA 185
                      6*****************************99882567899***********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.0E-34106171IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.684106184IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37107187IPR004333Transcription factor, SBP-box
PfamPF031104.6E-31109183IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMSGRLNTAT SSDDFPFAAM QPPPYIGLEH GMAAAAGAGQ RLGGMQHHLY DNLDFAAAAA  60
TFQFQEQHQL LTLPPNGLPM APPPMPMPLQ MPMPMPSDVY PALGMPPRCQ AEGCKADLSG  120
AKHYHRRHKV CEYHAKAAVV VAAGGKQQRF CQQCSRFHAL TEFDEAKRSC RKRLAEHNRR  180
RRKPATSTEV SKDSAPPSKK PNSSSAITSS YTTDNKTLRA TKSTISSNTS VISCLDQSKA  240
ARPTLTLGAP QEKKDQLSTM LQVQAGHHHQ EQHFITSLVQ NNNNTSSSNN NNNILSCSSV  300
CSSALPSANR EVSDHNNNSS NNNGNNMHLF EVDFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-281091831184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166183KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001751G0380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965676.11e-104squamosa promoter-binding-like protein 10
SwissprotA2YFT92e-66SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE82e-66SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A0A9G6E51e-136A0A0A9G6E5_ARUDO; Sbp3
STRINGSi006559m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.17e-33squamosa promoter binding protein-like 8