PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001698G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 311aa    MW: 32158.5 Da    PI: 6.3505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001698G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.71.2e-23118179159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg+ WrKYGqKe+++s++prsYYrCt++   gC++k++v+ +++dp+  ++t  geH+++
  PH01001698G0040 118 LDDGHIWRKYGQKEIQNSPHPRSYYRCTHKsdqGCNAKRHVQLCDTDPSKYVVTCYGEHTCR 179
                      58***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-26108181IPR003657WRKY domain
PROSITE profilePS5081123.571113181IPR003657WRKY domain
SuperFamilySSF1182901.44E-24116181IPR003657WRKY domain
SMARTSM007742.0E-33118180IPR003657WRKY domain
PfamPF031061.2E-23119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MASSGGGAGG DVPAERAAAA VIDLIEVREG AARLKSLLQE QSSPWAELMD GMLNKLSSAL  60
SALDTGAGAA AAAGGQSSAA GSDGVRQSVT SPSRNTTRKR SFGRRSQCTS SKRVTATLDD  120
GHIWRKYGQK EIQNSPHPRS YYRCTHKSDQ GCNAKRHVQL CDTDPSKYVV TCYGEHTCRD  180
PSTIPMVIDA PAGSASDRTN NLISFAPSYT TARAGGATSQ LVKERSITQL SSSWCTCDDV  240
FSSSAEPFVQ VDELAAVVGP AGMTSSTLGS APDYGGLGDL AGGGGVGTGS FPSSPNSLGF  300
GEDDLFRFDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-28114179469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001698G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185911.11e-109probable WRKY transcription factor 64
TrEMBLA0A287NZT91e-112A0A287NZT9_HORVV; Uncharacterized protein
STRINGEMT133691e-109(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.18e-23WRKY DNA-binding protein 46