PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01001685G0440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 195aa MW: 21257.2 Da PI: 8.3299 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 113.3 | 1.4e-35 | 61 | 136 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yhrrh+vC +++a++v+++++++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k PH01001685G0440 61 RCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDDVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 136 6************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-27 | 55 | 123 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29 | 59 | 136 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-33 | 60 | 139 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-27 | 62 | 136 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MVPCACPEVD EMAAAAEVED VATELLAGAR KKSDAARGGG AAAGGGGGSG GAGRGAAAEM 60 RCQVPGCEAD IRELKGYHRR HRVCLRCAHA AAVMLDDVQK RYCQQCGKFH ILLDFDEDKR 120 SCRRKLERHN KRRRRKPDSK GTLEKEIDEQ LELSADGSGD GELREAKMIF TLDRTSLTRT 180 MKYLGNMNFF LNPV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 2e-40 | 61 | 141 | 5 | 85 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 118 | 136 | KRSCRRKLERHNKRRRRKP |
2 | 122 | 134 | RRKLERHNKRRRR |
3 | 129 | 136 | NKRRRRKP |
4 | 130 | 135 | KRRRRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01001685G0440 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK250312 | 1e-120 | AK250312.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf72c21, mRNA sequence. | |||
GenBank | AK363545 | 1e-120 | AK363545.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2016I24. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656292.2 | 1e-86 | squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q6I576 | 5e-87 | SPL9_ORYSJ; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A1D6FQB3 | 2e-87 | A0A1D6FQB3_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
TrEMBL | A0A1D6FQB4 | 3e-88 | A0A1D6FQB4_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||
STRING | GRMZM2G109354_P01 | 3e-88 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6922 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18830.3 | 1e-29 | squamosa promoter binding protein-like 7 |
Publications ? help Back to Top | |||
---|---|---|---|
|