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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001671G0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 622aa MW: 66414.2 Da PI: 6.8433 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.9e-16 | 373 | 419 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq PH01001671G0060 373 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 419 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-20 | 367 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.942 | 369 | 418 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.77E-17 | 372 | 423 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-20 | 373 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-13 | 373 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 375 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MPLLALQGES DGDEFDELLW ENGQAMVHGR TRRKHPHPQA AFPPFGYGGT SSSRGREKQP 60 SGDTAAVFTK TVGVFGAVGM APSVHDFAPG LDATHDNGDD DTVPWIHYPI IDDDDNTAPA 120 LAADYCSDFF SELQAAAANL GSLPPSNHNA TSIRSTPVAT SSREPSKKSH GLSVPAARTS 180 EPQAELDAAK QPRPSGSREG VMNFSLFSRP AALARASLQS AQRQQGTDKA SNATASNRME 240 STVVQTASGP RNAPVLADQR TVWPQPKEVR FASTAAPTAT GGNLQQEMPR DKVGNNMAVP 300 VKTDEARKAR EATVATSSVC SGNGARNDES WRQQKQKSQA DCSASQDEDL DDESGVLRRS 360 ATRSAKRSRI AEVHNLSERR RRDRINEKMR ALQELIPNCN KIDKASMLDE AIEYLKTLQL 420 QVQMMSMGTG LCIPPMLLPP AMQHLQIPPM ALFPHLGMGL GYGMGVFDMN STGRIPIPPM 480 PGAHFPCPMI PGATPQGLGI PGPNALPMFG VPGQANPSSA SSVPPFASLA GLPVRPNLAP 540 QDSGSMANMV QEQQGITNQQ QESLRKEARQ GENTGDPQIQ IITQGENQHF RAPSSAQTKS 600 RQFLDGSGKE TNTTGRNGAE A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 377 | 382 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001671G0060 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682498.1 | 0.0 | transcription factor APG isoform X2 | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | A0A3L6R267 | 0.0 | A0A3L6R267_PANMI; Transcription factor APG-like isoform X1 | ||||
STRING | Si000700m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-44 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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