PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001658G0140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 18853.6 Da PI: 6.9853 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128 | 4.2e-40 | 16 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+lapyfp +++ +f+ +h++FGasn++kll++lpe r da+ss+vyeAearardPvyG++g + +lq+q+++lk++l PH01001658G0140 16 PCAACKTLRRRCADGCTLAPYFPPTEAGRFWTAHRVFGASNMMKLLQELPEGCRADAVSSMVYEAEARARDPVYGCAGAVCRLQKQVNELKVQL 109 7********************************************************************************************* PP DUF260 95 allkee 100 a++++ PH01001658G0140 110 ARAQAD 115 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.491 | 15 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-39 | 16 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MESASGTSPM LAVLSPCAAC KTLRRRCADG CTLAPYFPPT EAGRFWTAHR VFGASNMMKL 60 LQELPEGCRA DAVSSMVYEA EARARDPVYG CAGAVCRLQK QVNELKVQLA RAQADLLNLH 120 AHYADLLQLL QTPPPPAAAH DHDHDHDVLL LQALHGGHAS GPAAALVQAQ QQLWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-39 | 15 | 117 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-39 | 15 | 117 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001658G0140 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093544 | 0.0 | FP093544.1 Phyllostachys edulis cDNA clone: bphyst018p14, full insert sequence. | |||
GenBank | FP101237 | 0.0 | FP101237.1 Phyllostachys edulis cDNA clone: bphylf044o11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649894.1 | 6e-66 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 5e-55 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | J3LMQ1 | 1e-64 | J3LMQ1_ORYBR; Uncharacterized protein | ||||
STRING | OB03G23270.1 | 2e-65 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-55 | LOB domain-containing protein 1 |