PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001599G0160
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 382aa    MW: 41635.2 Da    PI: 4.6765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001599G0160genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-13156199755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ErrRR+++N+++ +Lr+l+P+      +K++ a+iL  A++YI  Lq
  PH01001599G0160 156 MAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 199
                      79*********************7.....7***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-18147213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-14147203No hitNo description
PROSITE profilePS5088816.044149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-16155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-11156199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-17156211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAEEQQMAEL VMAQCGGGGG GGDDDHGQDA NQAWPPETPG FSWDAADPQR LYAASSLNLF  60
DAAEPFLAVQ ATGVDVVSDA AAAGWQYAAA GSEPSVVVQE QLHGAAGAGQ AGGAESGLEG  120
SELQGDPDDD IDGELQQCMS TNGKGGGKRQ QCKNLMAERR RRKKLNDRLY KLRSLVPNIT  180
KMDRASILGD AIDYIVGLQK QVKALQDELE DPNPPADNHH LHHGDDPKAP DVLIDHPPPE  240
SLVGLDNDEA SPPNSQQQLA IMEEKKYLPG SASKMYTAYL LKEQKTLKSF VCHYIKKEKE  300
EQQPHGEGLT TTRSFDQAFH HKKEEKKRYG YRIMQVYNNG LQSTQVLPQT SHVDTKVPLG  360
IAAGLPDEYF QEFIVDFYTS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-13147208263Transcription factor MYC2
5gnj_B8e-13147208263Transcription factor MYC2
5gnj_E8e-13147208263Transcription factor MYC2
5gnj_F8e-13147208263Transcription factor MYC2
5gnj_G8e-13147208263Transcription factor MYC2
5gnj_I8e-13147208263Transcription factor MYC2
5gnj_M8e-13147208263Transcription factor MYC2
5gnj_N8e-13147208263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157164ERRRRKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001599G0160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750742e-72AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825508.16e-78transcription factor TDR-like
RefseqXP_025825517.16e-78transcription factor TDR-like
RefseqXP_025825524.16e-78transcription factor TDR-like
RefseqXP_025825535.16e-78transcription factor TDR-like
RefseqXP_025825544.16e-78transcription factor TDR-like
RefseqXP_025825551.16e-78transcription factor TDR-like
RefseqXP_025825560.16e-78transcription factor TDR-like
SwissprotQ6YUS32e-74TDR_ORYSJ; Transcription factor TDR
TrEMBLA0A0E0JUT19e-78A0A0E0JUT1_ORYPU; Uncharacterized protein
TrEMBLA0A453N1941e-79A0A453N194_AEGTS; Uncharacterized protein
STRINGOPUNC02G01010.12e-78(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-24bHLH family protein
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  7. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  8. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]