PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001578G0450
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 601aa    MW: 64242.3 Da    PI: 7.4075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001578G0450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.5e-16388434455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  PH01001578G0450 388 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 434
                      5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-20381442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-17381438No hitNo description
SuperFamilySSF474591.44E-20382443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13388434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MEDHARQDSG GRLIIITRWR RRIFRSDGNE FAELLWENGQ AVVHGRRKYP QTAFPPFGYG  60
DTTSSSRAQE KHPGGDTVAA FTKVGGAFGA MGMPPSVHDF SSGLDAAHDN GDDDTVPWIH  120
YPIIDDDDNT APALAADYCS EFFSELQAAA ANLGSLPPSN HNATNIRSTP VATSSREPSK  180
ESHGLSVPAT RTSEPQAELA AAKQPRPSGS GEGVMNFSLF SRPAALARAN LQSADKASNV  240
TASNRMVSTV VQTAGGPRNA PVFADQRMVW PQPKEVRTVR FASTAAPPTS TPAPTATVGN  300
LQQEMARDKV GNNMVVKKDE ARKAPEATVA TSSVCSGNGA GNDEPWRQQK RKSQAECSAS  360
QDEDLDDESG VLRRSATRGT KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA  420
SMLDEAIEYL KTLQLQVQMM SMGTGLWIPP MLLPPAMQHL QIPPMAHFPH LGMGLGYGMG  480
VFDMNGTGTI PFPPMPGAHF PCPMIPGATP QGLGIPGTNA LPMFGGVSGQ AIPSSASSVP  540
PFASLAGLLV RLNLAPQASG AMANMVQEQQ QGIVNQQQKS LNKEATQGAN TGDPQIQIIM  600
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001578G0450
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233063.20.0transcription factor APG
RefseqXP_024314974.10.0transcription factor APG
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3L6R2670.0A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRINGBRADI2G11100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-56phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]