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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001576G0310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24615 Da PI: 5.2206 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.7e-13 | 50 | 96 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ e+ErrRR r+N+ + Lr ++Pk +K+sK ++L A+++Ik+Lq PH01001576G0310 50 KNLEAERRRRGRLNNNILALRAVVPKI-----TKMSKESTLSDAIDHIKKLQ 96 56799*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.799 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-16 | 46 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 48 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 49 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-13 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MPRRPRPRSG EEVRVEDFVE SVLNFGGGGE ESDGRQEPAV AEVTTKYKSK NLEAERRRRG 60 RLNNNILALR AVVPKITKMS KESTLSDAID HIKKLQNEVL ELQRQLADSP GEAWEKQGSA 120 SCSESFAPTD NIHCQGQVEL IPLGSCKYNL KIFWTKKACL FTEVLEELCS YNVQVLSLNT 180 ITFYGYAESF FSIEVKGEQD VVMVELRNLL SSIVEVPSI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001576G0310 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177646.1 | 1e-120 | transcription factor UDT1-like | ||||
Swissprot | B9FXT3 | 1e-104 | UDT1_ORYSJ; Transcription factor UDT1 | ||||
TrEMBL | A0A2X0SMU7 | 1e-118 | A0A2X0SMU7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B6AVZ9 | 1e-119 | A0A3B6AVZ9_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KV36 | 1e-119 | A0A446KV36_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453BBG0 | 1e-118 | A0A453BBG0_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8D773 | 1e-118 | M8D773_AEGTA; Transcription factor DYSFUNCTIONAL TAPETUM 1 | ||||
STRING | EMT32311 | 1e-119 | (Aegilops tauschii) | ||||
STRING | Traes_2AS_C0C74B775.1 | 1e-119 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11982 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 3e-10 | bHLH family protein |
Publications ? help Back to Top | |||
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