PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GATA

Protein Properties

Length: 198aa MW: 20747.4 Da PI: 9.0526

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001557G0370	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.2	4.1e-17	90	126	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ PH01001557G0370 90 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 126 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	4.4E-8	84	137	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.28E-11	88	134	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.7E-14	89	128	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.02E-15	89	138	No hit	No description
Pfam	PF00320	1.1E-14	90	126	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	90	117	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTGLGMADGG SYPQEAAVAD LQQDQAATRS NSGGYPSPLH LLSTLSPSIY GFAPFWGSDR 60 VPQRIRSRAN PESDRVIQIG VRRWLPRIRC QNCGTSEKMT PAMRRGPAGP RTLCNACGLM 120 WANKGTLRSC PKANVEAPLV TIERSNAAVS QSKSGTDNKA LVAPNNDIVA ASNVEAMGES 180 GPANAAAIEG APKAQLE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250\|UniProtKB:Q8LAU9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001557G0370

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By drought and salt stresses. {ECO:0000269\|PubMed:19618278}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354746	2e-67	AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024313633.1	2e-51	GATA transcription factor 18 isoform X3
Swissprot	Q10F25	3e-45	GAT18_ORYSJ; GATA transcription factor 18
TrEMBL	A0A3B6HYZ3	1e-47	A0A3B6HYZ3_WHEAT; Uncharacterized protein
TrEMBL	A0A446RQE0	2e-46	A0A446RQE0_TRITD; Uncharacterized protein
STRING	TRIUR3_15386-P1	3e-46	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3460	37	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	2e-21	ZIM-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]