PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001538G0490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 545aa    MW: 57757.2 Da    PI: 5.1031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001538G0490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12337382555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L+el+P++      K +Ka++L + +eY+k Lq
  PH01001538G0490 337 HSIAERLRREKISDRMKNLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 382
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-16330388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.55E-13330386No hitNo description
PROSITE profilePS5088817.339332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-16334386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9337382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGGFVDPPIP SPAWPQDIVF TGSSWTGSAS SLADSSAEDI EFHLQNGSSP ALMHRSSAKE  60
TVDGAVFPGD TMLSPVKLHE QLLHAELQQS DDVAHGLRFA LGGAAERALM AGTLGSILNT  120
PCPISLADSA PEICSSNESS GSEQSGLPQF LMGEQQPVSE SAAWPSAYAN VFSMAGEETS  180
QSFGFGRIRN DVLLHEAACT PNGKKYQQLV TVPSAAQLQL HDDVELNTGK LLSFAPGQQL  240
TPSIDSLQIN QKEFSGLHHL NLSSLVSGPL APFNATGAAH NPKQVSVFLF TEDSSGKNGL  300
IAPFVNRSEV PNGNGIAGNG APKPRVRARR GQATDPHSIA ERLRREKISD RMKNLQELVP  360
NSNKTDKASM LDEIIEYVKF LQLQVKVFPP ASLLMPLLSL KVLSMSRLGA TEAVVPLLTE  420
SQTESFGLLL SPKSEERQAG LAAAGGWLAQ SELQDSLAFE QEVVQLMENN MTTAMQYLQN  480
KGICLMPVAL ASAISSQKGT SSAAVRPVGG GTDNGVGGDK DDVKRVLDAL NPLLSSPKEM  540
KSRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001538G0490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419245e-46AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
GenBankAP0048655e-46AP004865.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0020C11.
GenBankAP0149585e-46AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126105e-46CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952733.10.0uncharacterized protein LOC101783147
TrEMBLK3YRP50.0K3YRP5_SETIT; Uncharacterized protein
STRINGSi016939m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-50LJRHL1-like 3