PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001525G0260
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 263aa    MW: 29030.2 Da    PI: 10.2742
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001525G0260genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.3e-11150197455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   K+++L + ++YI+ Lq
  PH01001525G0260 150 SHSLAERARREKISERMKILQDLVPGC----NKVIGKSSVLDEIINYIQALQ 197
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.95E-9144201No hitNo description
SuperFamilySSF474591.44E-17144212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.872146196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-18146214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-8150197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-11152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPAPSLAAE LWRPHHLAAA PRVDAPLEAS SVVTDRNNGS APARRGARGR VVQACLHLRH  60
RRRRRPGLAG GQCRVEWDVL NEVRGAAQAD PEAKRLKPMK SSDNNDNLRT EAQTDSENAS  120
KAVDKNPTPS EPPKQDYIHV KARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI  180
GKSSVLDEII NYIQALQRQV EFLSMKLEAV NAHVNDGIIA FPSKDVSLAN GYKQLILITE  240
LPGFMKKNLL KVKSPLDTLE LL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001525G0260
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426451e-125AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.12e-86transcription factor BHLH094-like
SwissprotQ69WS32e-87BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0A9PU267e-90A0A0A9PU26_ARUDO; Uncharacterized protein
STRINGONIVA07G05030.17e-88(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-52BIG PETAL P