PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001463G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 354aa    MW: 39592.7 Da    PI: 7.22
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001463G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10184232355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PH01001463G0020 184 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 232
                      58**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-16179249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.17E-10179236No hitNo description
PROSITE profilePS5088815.447181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16181249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-8184232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10187237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDANTRYYCK KEKERKSELL ASWRVHVISR SGQQSDQGPA ANSGKKFLEV NWNSVTMHQK  60
MGYNSGPYGF QAYGMELEER PGLYRSSTGT FCQNIQMSDE HSAGVKKRKG IDDCIALLNP  120
SASSRMQNVG DQQTEVSSQP ERNPVEESNR KISPKMQSKE DSSDGDDTKE DYVHVRAKRG  180
QATNSHSLAE RLRRKKISER MKLLQDLVPG CSKITGKAVM LDEIINYVQS LQRQVEFLSM  240
KLATVNPELA FDIEQILSKQ MMLSQDRLLA FYGADPGSST LVAHFNQGII RPDMICNVSN  300
PVDVLQGTFH DVSTMNQIPE MWEGLQNIPH MNFNPGMAAD SSTNIAGSMK IEQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001463G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609590.0AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753140.10.0transcription factor bHLH74 isoform X2
SwissprotQ9CAA97e-51BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3B6I0A30.0A0A3B6I0A3_WHEAT; Uncharacterized protein
TrEMBLA0A3B6IP900.0A0A3B6IP90_WHEAT; Uncharacterized protein
TrEMBLA0A446R7D80.0A0A446R7D8_TRITD; Uncharacterized protein
TrEMBLA0A446RT350.0A0A446RT35_TRITD; Uncharacterized protein
STRINGTraes_4AL_0BB0A30D1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]