PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001446G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 371aa    MW: 39139.2 Da    PI: 6.1126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001446G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.4e-051621991254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  PH01001446G0150 162 RRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 199
                      9*****************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-10132210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.75150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-5156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10158210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-6162204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MPPPPGAEDD FLDHFFGIPS SFPSAAAAGA GTGHPFPLAL SLDAAAQASG SAKRLHDDPD  60
GDKTDRDPVQ LAGLFAPVFA GAGGVQPPHL RPAPPRQVFH GQPKPGEGAM APQPPAPRPK  120
VRARRGQATD PHSIAERWMC YDYLQGVKCG LRVYLFLVAS LRRERIAERM RALQELVPNT  180
NKTDRAAMLD EILDYVKFLR LQVKVLSMSR LGGASAVAQL VADIPLSVKG EASDSGSKQQ  240
IWEKWSTDGT EKQLWVTAVL ALFIAGDHTA FPSLMGWAPP SAAIEAWRGV GSGGDEGGGR  300
AGTSRRAGGE ALAEDEVHPG VGVVGEVGWD TTEAQEVDGD GVTLEDAAAR QSSSNSRRLL  360
IVVLGVGRWG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001446G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.11e-112transcription factor UNE12
TrEMBLA0A2S3GW171e-111A0A2S3GW17_9POAL; Uncharacterized protein
STRINGSb02g004570.11e-110(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-35bHLH family protein