PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001365G0550
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 140aa    MW: 14919.7 Da    PI: 8.2338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001365G0550genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-052446123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C +C+k F+++  L  H++ H
  PH01001365G0550 24 FSCCYCSKKFRTSQALGGHQNAH 46
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-52350No hitNo description
PROSITE profilePS5015710.5542451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDNEELNLNL SLHPSYSPRL PTAFSCCYCS KKFRTSQALG GHQNAHKLQR NLAKRSCQAT  60
LTISQGKGEN RGMKEGSSAL SAESGCEVSS GKKHHEEVWR VLQGSGGSSS SGTMIHNAIE  120
QGVGNEDLAN GMIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001365G0550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0K1832e-62A0A0E0K183_ORYPU; Uncharacterized protein
STRINGOPUNC02G18740.13e-63(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69922646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-14zinc finger protein 2