PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001350G0200

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HD-ZIP

Protein Properties

Length: 860aa MW: 93708.1 Da PI: 6.8915

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001350G0200	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	40	95	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R++ k PH01001350G0200 40 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRQLDLEPLQVKFWFQNKRTQLK 95 688999**********************************************9987 PP
2	START	199.9	1.1e-62	370	592	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela +a++el+++a ++ep+W + +n++e+ + f+++ + ++ea+r s+vv+m++ +lve+++d++ q+ + + +a PH01001350G0200 370 ELAVAAMDELIQMARLDEPLWGAPGlvdgptKALNEEEYGRMFPRGLGpkqygLKSEASRHSAVVIMTHDNLVEIVMDVN-QFATVFSsivsRA 462 57899**************87667789999*******998889***************************.88888888888 PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 +t+ev+s+g galq+m++e+q++splvp R+++fvRy++ ++g+w++vdvS+ds ++ p v +++++pSg+li++++ng+skvtw PH01001350G0200 463 STHEVLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKHNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTW 552 *************************************************************98....7******************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vehv++++r++h+++++lv+s+la+gak+wv tl+rqce+ PH01001350G0200 553 VEHVEVDDRSVHNIYKPLVNSSLAFGAKRWVGTLDRQCER 592 ************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-21	27	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-19	28	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.309	37	97	IPR001356	Homeobox domain
SMART	SM00389	6.4E-17	38	101	IPR001356	Homeobox domain
CDD	cd00086	2.77E-18	39	95	No hit	No description
Pfam	PF00046	3.3E-17	40	95	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	72	95	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	38.717	361	595	IPR002913	START domain
SuperFamily	SSF55961	2.89E-32	362	594	No hit	No description
CDD	cd08875	7.38E-119	365	591	No hit	No description
SMART	SM00234	5.9E-60	370	592	IPR002913	START domain
Pfam	PF01852	2.5E-51	371	592	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.0E-6	430	586	IPR023393	START-like domain
SuperFamily	SSF55961	1.72E-24	613	849	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 860 aa Download sequence Send to blast
MIHGRADGLV DEFESKSCSE NVDADGVSGD DQDPNQRPRK KRYHRHTQHQ IQEMESFFKE 60 CPHPDDKQRK ELSRQLDLEP LQVKFWFQNK RTQLKPLPLS SMSSACSMLC FLPSATVPTT 120 PPPPPSMRRC EDSVWSRQGE ETRTEEERWS LETEEAKAKE RRSLGTEEEF GMGRHLPLPR 180 DVAIHLHVPS DLGDWRGGLK RSKREDKGAV QDGRKKLNRC HRPSVRHLGQ KTGGQKSCLG 240 QNQLERQENA QLRAESDKLR AENMRYKEAL SSASCPNCGG PAALGEMSFD EHHLRIDRIS 300 GIAAKHVGKP MVSFPVLSSP LAVAAARSPL DLAAAYGVQP SLGADMFGAG DLLRSLSGGQ 360 LDVDKPMIVE LAVAAMDELI QMARLDEPLW GAPGLVDGPT KALNEEEYGR MFPRGLGPKQ 420 YGLKSEASRH SAVVIMTHDN LVEIVMDVNQ FATVFSSIVS RASTHEVLST GVAGNYNGAL 480 QVMSMEFQVP SPLVPTRESY FVRYCKHNSD GTWAVVDVSL DSLRPSPVLK CRRRPSGCLI 540 QEMPNGYSKV TWVEHVEVDD RSVHNIYKPL VNSSLAFGAK RWVGTLDRQC ERFASAMANN 600 IPNGDLGVIT NVEGKKSMLK LAERMVTSFC GGVTASVAHQ WTTLSGSGAE DVRVMTRKSV 660 DDPGRPPGIV LNAATSFWLP VPPKRVFDFL RDESSRSEWD ILSNGGVVQE MAHIANGRDH 720 GNCVSLLRVN SANSNQSNML ILQENCTDAS GSYVVYAPVD IVAMNLVLNG GDPDYVALLP 780 SGFAILPDGP SGRVQGGGGG CAGENAGSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL 840 IACTVERIKA AVCRESNPQ*

Sequence ? help Back to Top

Protein Sequence Length: 860 aa Download sequence Send to blast

MIHGRADGLV DEFESKSCSE NVDADGVSGD DQDPNQRPRK KRYHRHTQHQ IQEMESFFKE  60
CPHPDDKQRK ELSRQLDLEP LQVKFWFQNK RTQLKPLPLS SMSSACSMLC FLPSATVPTT  120
PPPPPSMRRC EDSVWSRQGE ETRTEEERWS LETEEAKAKE RRSLGTEEEF GMGRHLPLPR  180
DVAIHLHVPS DLGDWRGGLK RSKREDKGAV QDGRKKLNRC HRPSVRHLGQ KTGGQKSCLG  240
QNQLERQENA QLRAESDKLR AENMRYKEAL SSASCPNCGG PAALGEMSFD EHHLRIDRIS  300
GIAAKHVGKP MVSFPVLSSP LAVAAARSPL DLAAAYGVQP SLGADMFGAG DLLRSLSGGQ  360
LDVDKPMIVE LAVAAMDELI QMARLDEPLW GAPGLVDGPT KALNEEEYGR MFPRGLGPKQ  420
YGLKSEASRH SAVVIMTHDN LVEIVMDVNQ FATVFSSIVS RASTHEVLST GVAGNYNGAL  480
QVMSMEFQVP SPLVPTRESY FVRYCKHNSD GTWAVVDVSL DSLRPSPVLK CRRRPSGCLI  540
QEMPNGYSKV TWVEHVEVDD RSVHNIYKPL VNSSLAFGAK RWVGTLDRQC ERFASAMANN  600
IPNGDLGVIT NVEGKKSMLK LAERMVTSFC GGVTASVAHQ WTTLSGSGAE DVRVMTRKSV  660
DDPGRPPGIV LNAATSFWLP VPPKRVFDFL RDESSRSEWD ILSNGGVVQE MAHIANGRDH  720
GNCVSLLRVN SANSNQSNML ILQENCTDAS GSYVVYAPVD IVAMNLVLNG GDPDYVALLP  780
SGFAILPDGP SGRVQGGGGG CAGENAGSGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL  840
IACTVERIKA AVCRESNPQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269\|PubMed:11846882}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001350G0200

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120496	0.0	AK120496.1 Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650023.1	0.0	homeobox-leucine zipper protein ROC1 isoform X2
Swissprot	Q6ZAR0	0.0	ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBL	A0A0E0LRZ7	0.0	A0A0E0LRZ7_ORYPU; Uncharacterized protein
STRING	OPUNC08G04870.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Lee JH, et al. Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. Plant Cell, 2008. 20(1): p. 152-67 [PMID:18223036] Yi J, et al. OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa. J. Exp. Bot., 2016. 67(8): p. 2425-37 [PMID:26912801] Dou M,Cheng S,Zhao B,Xuan Y,Shao M The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice. Int J Mol Sci, 2016. 17(3): p. 233 [PMID:26927068] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]